DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr83 and Nr2f6

DIOPT Version :10

Sequence 1:NP_649647.1 Gene:Hr83 / 40783 FlyBaseID:FBgn0037436 Length:278 Species:Drosophila melanogaster
Sequence 2:NP_620813.2 Gene:Nr2f6 / 245980 RGDID:621685 Length:390 Species:Rattus norvegicus


Alignment Length:342 Identity:96/342 - (28%)
Similarity:144/342 - (42%) Gaps:94/342 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDQSSGKHYGVSCCDGCSCFFKRSVRRGSSYACIALVGNCVVDKARRNWCPSCRFQRCLAV 71
            |.||||:||||||||..|:||..|||||:||..||.|.: ..:|.:|:..||.|..||.::|..|
  Rat    57 CVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRS-NRDCQIDQHHRNQCQYCRLKKCFRV 120

  Fly    72 GMNAAAVQEERGPRNQQVALYRTGRRQAPPSQAAPSP------------------------TPHS 112
            ||...|||..|.|             .|.|..||.||                        .|:.
  Rat   121 GMRKEAVQRGRIP-------------HALPGPAACSPPGAAGVEPFAGPPVSELIAQLLRAEPYP 172

  Fly   113 QALHF-------------QILAQILVTCLRQAKANEQFALLDRCQQDAIFQVVWSEIFVLRASHW 164
            .|..|             ::.|::|.:.:..|:....|..|....|.|:.::.|||:|||.|:..
  Rat   173 AAGRFGGGGAVLGIDNVCELAARLLFSTVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQA 237

  Fly   165 SLDI--SAMIDGCG---------------------DEQLKRLICEAHQLRADVLELNFMESLILC 206
            :|.:  :.::...|                     .||:.:|    .:|:.|..|...::::.|.
  Rat   238 ALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKL----GRLQVDAAEYGCLKAIALF 298

  Fly   207 RKELAINAEYAVILGSHSKAALISLARYTLQQ--SNYLRFGQLLLGLRQLCLRRFDCAL-SCMF- 267
            ..:....::.|.:.....||. ::|..|...|  |...|||:||  ||...||....:| |.:| 
  Rat   299 TPDACGLSDPAHVESLQEKAQ-VALTEYVRAQYPSQPQRFGRLL--LRLPALRAVPASLISQLFF 360

  Fly   268 ---------RSVVRDIL 275
                     .:::||:|
  Rat   361 MRLVGKTPIETLIRDML 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr83NP_649647.1 NR_DBD_PNR_like_2 7..88 CDD:143515 42/80 (53%)
Nr2f6NP_620813.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..50
NR_DBD_COUP_TF 57..129 CDD:143516 39/72 (54%)
NR_LBD_COUP-TF 157..387 CDD:132746 48/228 (21%)
Important for dimerization. /evidence=ECO:0000250 314..390 21/67 (31%)
Blue background indicates that the domain is not in the aligned region.

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