DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr83 and Rxrb

DIOPT Version :10

Sequence 1:NP_649647.1 Gene:Hr83 / 40783 FlyBaseID:FBgn0037436 Length:278 Species:Drosophila melanogaster
Sequence 2:NP_001192143.1 Gene:Rxrb / 20182 MGIID:98215 Length:524 Species:Mus musculus


Alignment Length:325 Identity:94/325 - (28%)
Similarity:141/325 - (43%) Gaps:68/325 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDQSSGKHYGVSCCDGCSCFFKRSVRRGSSYACIALVGNCVVDKARRNWCPSCRFQRCLAV 71
            ||:|||:||||||||..|:||..||||::|:..:|:| ....:|.|||.:||.|..||:|:|||.
Mouse   192 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSC-RDNKDCTVDKRQRNRCQYCRYQKCLAT 255

  Fly    72 GMNAAAVQEER---------------GPRNQ--------QVALYRTGRR--QAPPSQAAPSPTPH 111
            ||...||||||               .|...        ::|:.:...:  :.|.:......:|:
Mouse   256 GMKREAVQEERQRGKDKDGDGDGAGGAPEEMPVDRILEAELAVEQKSDQGVEGPGATGGGGSSPN 320

  Fly   112 SQALHF-QILAQILVTCLRQAKANEQFALLDRCQQDAIFQVVWSEIFVLRASHWSLDI------- 168
            ....:. |...:.|.|.:..||....|:.|....|..:.:..|:|:.:...||.|:|:       
Mouse   321 DPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 385

  Fly   169 --------SAMIDGCG---DEQLKR----LICEAHQLRADVLELNFMESLILCR---KELAINAE 215
                    ||...|.|   |..|.|    |:.:...:|.|..||..:.::||..   |.|:...|
Mouse   386 TGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGE 450

  Fly   216 YAVI-------LGSHSKAALISLARYTLQQSNYLRFGQLLLGLRQLCLRRFDCALSCMFRSVVRD 273
            ..::       |.::.|      .:|..||.   ||.:|||.|..|......|.....|..::.|
Mouse   451 VEILREKVYASLETYCK------QKYPEQQG---RFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 506

  Fly   274  273
            Mouse   507  506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr83NP_649647.1 NR_DBD_PNR_like_2 7..88 CDD:143515 45/103 (44%)
RxrbNP_001192143.1 Modulating. /evidence=ECO:0000250 1..191
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..167
NR_DBD_RXR 191..266 CDD:143514 42/74 (57%)
Hinge 258..382 24/123 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 263..285 5/21 (24%)
NR_LBD_RXR_like 285..502 CDD:132741 48/225 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 300..323 2/22 (9%)
Blue background indicates that the domain is not in the aligned region.

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