DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr83 and nhr-150

DIOPT Version :9

Sequence 1:NP_649647.1 Gene:Hr83 / 40783 FlyBaseID:FBgn0037436 Length:278 Species:Drosophila melanogaster
Sequence 2:NP_506854.1 Gene:nhr-150 / 182297 WormBaseID:WBGene00007367 Length:342 Species:Caenorhabditis elegans


Alignment Length:82 Identity:24/82 - (29%)
Similarity:34/82 - (41%) Gaps:16/82 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDQSSGKHYGVSCCDGCSCFFKR---SVRRGSSYACIALVGNCVVDKAR---RNWCPSCRF 65
            |.|||...:..|:|...|..|:.||:|   |.::.....|          |.|   .:.|.|||.
 Worm     2 CQVCGAAEADLHFGGISCRACAAFFRRFFLSKKQSKKCTC----------KTRILDSHPCRSCRI 56

  Fly    66 QRCLAVGMNAAAVQEER 82
            .:|...||.:..:|..|
 Worm    57 LKCFEAGMTSKKIQSGR 73

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr83NP_649647.1 NR_DBD_PNR_like_2 7..88 CDD:143515 24/82 (29%)
nhr-150NP_506854.1 ZnF_C4 2..65 CDD:197701 21/72 (29%)
HOLI 139..310 CDD:214658
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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