DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr83 and nhr-1

DIOPT Version :10

Sequence 1:NP_649647.1 Gene:Hr83 / 40783 FlyBaseID:FBgn0037436 Length:278 Species:Drosophila melanogaster
Sequence 2:NP_001024853.1 Gene:nhr-1 / 181783 WormBaseID:WBGene00003600 Length:445 Species:Caenorhabditis elegans


Alignment Length:153 Identity:50/153 - (32%)
Similarity:70/153 - (45%) Gaps:25/153 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDQSSGKHYGVSCCDGCSCFFKRSVRRGSSYACIALVGNCVVDKARRNWCPSCRFQRCLAV 71
            ||||.|.::|.||||:.|:||..||:|::....::.| ...|||.|:|..|..|..|||.:||.|
 Worm    73 CAVCSDLATGYHYGVASCNGCKTFFRRTIVSEQTFIC-QYNGNCDVNKNIRCACRHCRFNKCLLV 136

  Fly    72 GMNA-----AAVQEER---GPRNQQVALYRTGRRQAPPSQAAPSPTPH--------SQALHFQIL 120
            ||:|     .|:|.:|   ||..:        .:.:..|....:.|||        .|....:.|
 Worm   137 GMDAKALQIPAIQNDRDRIGPTKK--------IKMSSGSDDEQATTPHRLQDQEIIDQLTQVEGL 193

  Fly   121 AQILVTCLRQAKANEQFALLDRC 143
            .|.|..|:.........||...|
 Worm   194 CQELRRCIIPEVTGVTHALTSPC 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr83NP_649647.1 NR_DBD_PNR_like_2 7..88 CDD:143515 38/88 (43%)
nhr-1NP_001024853.1 NR_DBD_HNF4A 73..153 CDD:143518 35/80 (44%)
HOLI 252..414 CDD:214658
Blue background indicates that the domain is not in the aligned region.

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