DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr83 and nhr-19

DIOPT Version :10

Sequence 1:NP_649647.1 Gene:Hr83 / 40783 FlyBaseID:FBgn0037436 Length:278 Species:Drosophila melanogaster
Sequence 2:NP_496066.2 Gene:nhr-19 / 174512 WormBaseID:WBGene00003618 Length:477 Species:Caenorhabditis elegans


Alignment Length:104 Identity:38/104 - (36%)
Similarity:54/104 - (51%) Gaps:8/104 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDQSSGKHYGVSCCDGCSCFFKRSVRRGSSYACIALVGNCVVDKARRNWCPSCRFQRCLAV 71
            |.:||:.|:|||||:..|.||..||:|:|.:.....| .....|.|....|..|.:||:::||..
 Worm    80 CLICGEPSTGKHYGIVACLGCKTFFRRAVVQRQDTEC-KREKPCDVTTMARKACRACRYRKCLES 143

  Fly    72 GMNAAAVQEERGPRNQQVALYRTGRRQAPPSQAAPSPTP 110
            ||:..|:|    ||...:...|...|   ||.:..:|||
 Worm   144 GMSKEALQ----PRRDLIGCRRIRSR---PSCSTSTPTP 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr83NP_649647.1 NR_DBD_PNR_like_2 7..88 CDD:143515 31/80 (39%)
nhr-19NP_496066.2 NR_DBD_HNF4A 80..155 CDD:143518 31/79 (39%)
HOLI 268..447 CDD:214658
Blue background indicates that the domain is not in the aligned region.

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