DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr83 and nhr-49

DIOPT Version :10

Sequence 1:NP_649647.1 Gene:Hr83 / 40783 FlyBaseID:FBgn0037436 Length:278 Species:Drosophila melanogaster
Sequence 2:NP_001367039.1 Gene:nhr-49 / 172839 WormBaseID:WBGene00003639 Length:501 Species:Caenorhabditis elegans


Alignment Length:104 Identity:45/104 - (43%)
Similarity:58/104 - (55%) Gaps:13/104 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDQSSGKHYGVSCCDGCSCFFKRSVRRGSSYACIALVGNCVVDKARRNWCPSCRFQRCLAV 71
            ||||||:|:|.||||..|:||..||:|:|.|...:.| .....||:||..|..|..||||:|:.|
 Worm    35 CAVCGDKSTGTHYGVISCNGCKGFFRRTVLRDQKFTC-RFNKRCVIDKNFRCACRYCRFQKCVQV 98

  Fly    72 GMNAAAVQEERGPRNQQVALYRTGRRQAPPSQAAPSPTP 110
            ||...|:|.||.|..            :|.|.|:.:.||
 Worm    99 GMKREAIQFERDPVG------------SPTSGASLNGTP 125

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr83NP_649647.1 NR_DBD_PNR_like_2 7..88 CDD:143515 40/80 (50%)
nhr-49NP_001367039.1 NR_DBD_HNF4A 35..110 CDD:143518 38/75 (51%)
HOLI 228..382 CDD:214658
Blue background indicates that the domain is not in the aligned region.

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