DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr83 and nhr-23

DIOPT Version :10

Sequence 1:NP_649647.1 Gene:Hr83 / 40783 FlyBaseID:FBgn0037436 Length:278 Species:Drosophila melanogaster
Sequence 2:NP_001020975.1 Gene:nhr-23 / 172460 WormBaseID:WBGene00003622 Length:588 Species:Caenorhabditis elegans


Alignment Length:413 Identity:89/413 - (21%)
Similarity:140/413 - (33%) Gaps:174/413 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDQSSGKHYGVSCCDGCSCFFKRSVRRGSSYACIALVGNCVVDKARRNWCPSCRFQRCLAV 71
            |.||||:|||.||||..|:||..||:||.....:|.| ....|||||:..||.|..||.::|:.:
 Worm   163 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSIVNYQC-PRQKNCVVDRVNRNRCQYCRLKKCIEL 226

  Fly    72 GMNAAAVQEERGPRNQQ--------------------VALYRTGRRQAPPSQ------------- 103
            ||:..||:..|..:.|:                    .|:|  |....|||.             
 Worm   227 GMSRDAVKFGRMSKKQREKVEDEVRMHKELAANGLGYQAIY--GDYSPPPSHPSYCFDQSMYGHY 289

  Fly   104 -----------------------------AAPSPT------------------------------ 109
                                         |.||.|                              
 Worm   290 PSGTSTPVNGYSIAVAATPTTPMPQNMYGATPSSTNGTQYVAHQATGGSFPSPQVPEEDVATRVI 354

  Fly   110 ------------------------PH-SQALHFQILAQ----ILVTCLRQAKANEQFALLDRCQQ 145
                                    || |:|..:::.|:    ::...:..||:.:.|..|   .|
 Worm   355 RAFNQQHSSYTTQHGVCNVDPDCIPHLSRAGGWELFARELNPLIQAIIEFAKSIDGFMNL---PQ 416

  Fly   146 DAIFQVVWSEIF----VLRASHWSLDISAMIDGCG-------------DEQLKRLICEAHQLRAD 193
            :...|::...:|    |..|.::::|..|:   ||             |:...:||.|.:....:
 Worm   417 ETQIQLLKGSVFELSLVFAAMYYNVDAQAV---CGERYSVPFACLIAEDDAEMQLIVEVNNTLQE 478

  Fly   194 VLELNFMESLILCRKELAINAEYAV---ILGSHS----KAALISLARYTLQQSNYLRFGQLLLGL 251
            ::.|...:|      |||:.|...:   :..||.    ..|.|:.|. ||:.:.|          
 Worm   479 IVHLQPHQS------ELALLAAGLILEQVSSSHGIGILDTATIATAE-TLKNALY---------- 526

  Fly   252 RQLCLRRFDCALSCMFRSVVRDI 274
             |..:.|..|....:.|  ::|:
 Worm   527 -QSVMPRIGCMEDTIHR--IQDV 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr83NP_649647.1 NR_DBD_PNR_like_2 7..88 CDD:143515 37/80 (46%)
nhr-23NP_001020975.1 NR_DBD_ROR 156..250 CDD:143526 38/87 (44%)
NR_LBD 384..580 CDD:472173 38/189 (20%)

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