DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18048 and trmt13

DIOPT Version :9

Sequence 1:NP_649646.3 Gene:CG18048 / 40782 FlyBaseID:FBgn0037435 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_001182604.1 Gene:trmt13 / 100379916 XenbaseID:XB-GENE-984691 Length:464 Species:Xenopus tropicalis


Alignment Length:462 Identity:166/462 - (35%)
Similarity:244/462 - (52%) Gaps:71/462 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 PVTTTCSYWVLRKKRRCKMTANKGSEFCGAHASSAATTATCDEKAREDSFQERIPCPLDHKHTVF 80
            |:...||::|.||||.|||..::|.:|||.||.|          ..|...:.|||||||.||||:
 Frog    26 PLPGRCSHFVQRKKRFCKMIVSEGKKFCGEHAQS----------GEEHDSRRRIPCPLDPKHTVY 80

  Fly    81 KRKLAKHLTICNARDQESSLPYIVKGVNSGDNLKETDEDLNKFNQIKLHELADEEFYSLIDKVKN 145
            :.:|.|||..||:|::...:.| |:.||:|..:.||.:     |||.|..|:.:|...|.:|:|.
 Frog    81 EDQLPKHLKKCNSREKPKPVFY-VQDVNAGCLITETPD-----NQISLSSLSKDELQELTEKLKQ 139

  Fly   146 LYDKHINSSIQELQLEHESLKEELSRKDYGQETLRQLTQTTSLLGILEHDHQLMDHTSYIEFGAG 210
            : ...::....:.:|.|.||.|.|:....|....:.|.|..|:||.|::...|.....::|||||
 Frog   140 V-TSGLDPPAADKKLCHWSLLEALNDPANGDTASKHLKQQASILGHLDNLGLLSGSCCFVEFGAG 203

  Fly   211 KGQLAYFLATVLQEQKLSHSQVVLIDRMSLRHKKDNKLANREVVQRIRADIADLKLSALPELKKT 275
            :|:|::::....|..:  :...:|::|.:.|.|.|.| ....|.:|::.||..|.|..:|.|.:.
 Frog   204 RGKLSHWVDIATQGSE--NINFLLVERATTRFKVDGK-QRSSVFERLQIDIQHLCLGRVPSLNEK 265

  Fly   276 Q-RTVAFSKHLCGAATDLTLRCI-----LGDG----------------------NASSDY----- 307
            | ..:...||||||.|||.|||:     |.:|                      .|:..|     
 Frog   266 QLPVIGIGKHLCGAGTDLALRCLMQSNSLANGEPFPKKPRTDTFEQGTVKNECDKANPAYSTCVG 330

  Fly   308 -VLIALCCHHRCSWRSYVGRKFLQEAGIGPREFVILTKMVSWAVCGTGLSRERRKAMESADFQL- 370
             :.|||||||||.|..||||:|.|..|:..|||.:..:|.|||.||..|.   .||::| |.|: 
 Frog   331 GIAIALCCHHRCDWHHYVGREFFQSLGLDQREFSLFQRMSSWATCGMRLP---AKAIQS-DEQME 391

  Fly   371 ------------TETNTQRLTRQEREQIGQQCKRVLDYGRLEHLRSHGYQAELKFYVPRDVTLEN 423
                        :||..:.||.:|||.:|:.||.::||||::.|:..||.|.|::|...:|:|||
 Frog   392 SEEHDAEQQNCHSETVERFLTVKERESLGRLCKLLIDYGRVDFLQRMGYIAALQYYTEPEVSLEN 456

  Fly   424 VVLLARP 430
            |:|.|.|
 Frog   457 VLLTAIP 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18048NP_649646.3 zf-TRM13_CCCH 20..44 CDD:288558 12/23 (52%)
zf-U11-48K 69..92 CDD:283028 14/22 (64%)
TRM13 183..429 CDD:282990 103/292 (35%)
trmt13NP_001182604.1 zf-TRM13_CCCH 29..57 CDD:371694 14/27 (52%)
zf-U11-48K 69..92 CDD:368359 14/22 (64%)
TRM13 176..461 CDD:368337 103/291 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 161 1.000 Domainoid score I3993
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6875
Inparanoid 1 1.050 255 1.000 Inparanoid score I3106
OMA 1 1.010 - - QHG54880
OrthoDB 1 1.010 - - D364329at33208
OrthoFinder 1 1.000 - - FOG0005014
OrthoInspector 1 1.000 - - oto103949
Panther 1 1.100 - - LDO PTHR12998
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1546
SonicParanoid 1 1.000 - - X3545
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1313.110

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