Protein Alignment SmD2 and LSM3B

DIOPT Version :10

• Sequence 1: NP_649645.1
• Gene: SmD2 / 40781
• FlyBaseID: FBgn0261789
• Length: 119
• Species: Drosophila melanogaster
• Sequence 2: NP_177812.1
• Gene: LSM3B / 844021
• AraportID: AT1G76860
• Length: 98
• Species: Arabidopsis thaliana
• Alignment Length: 109
• Identity: 38/109 - (34%)
• Similarity: 58/109 - (53%)
• Gaps: 24/109 - (22%)

  Fly    19 EEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT--------- 74
            |||.....||.::..|:  :.::.:..|::::|.|::.|||:|.||:|.:|:|..|
plant     4 EEEATVREPLDLIRLSL--DERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETY 66

  Fly    75 -ELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNPLATAA 117
             |:.||.|           |.|..:|:|||.|||| ..||.|||
plant    67 EEIVRTTK-----------RTIEFLFVRGDGVILV-SPPLRTAA 98

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SmD2	NP_649645.1	Sm_D2	23..112	CDD:212467	30/98 (31%)
LSM3B	NP_177812.1	LSm3	11..92	CDD:212477	30/94 (32%)