DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmD2 and Naa38

DIOPT Version :9

Sequence 1:NP_649645.1 Gene:SmD2 / 40781 FlyBaseID:FBgn0261789 Length:119 Species:Drosophila melanogaster
Sequence 2:NP_084359.1 Gene:Naa38 / 78304 MGIID:1925554 Length:125 Species:Mus musculus


Alignment Length:80 Identity:18/80 - (22%)
Similarity:36/80 - (45%) Gaps:13/80 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KSELTPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 71
            :.|.:|...|||:.|       ::|.::::      |...:.:.|:|.....||.||::|.:.:|
Mouse    32 EQEDSPATRARQQLE-------ALLNKTMR------IRMTDGRTLVGCFLCTDRDCNVILGSAQE 83

  Fly    72 MWTELPRTGKGKKKV 86
            ..........|:.:|
Mouse    84 FLKPSDSFSAGEPRV 98

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmD2NP_649645.1 Sm_D2 23..112 CDD:212467 12/64 (19%)
Naa38NP_084359.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..42 2/9 (22%)
LSMD1 42..115 CDD:212486 15/70 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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