DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmD2 and Snrpd2

DIOPT Version :9

Sequence 1:NP_649645.1 Gene:SmD2 / 40781 FlyBaseID:FBgn0261789 Length:119 Species:Drosophila melanogaster
Sequence 2:NP_001102869.1 Gene:Snrpd2 / 680309 RGDID:1593018 Length:118 Species:Rattus norvegicus


Alignment Length:117 Identity:103/117 - (88%)
Similarity:111/117 - (94%) Gaps:2/117 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LVKPKSELTPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 67
            |.|||||:|||||.::|||||||||||||||||||||||||||||||||||||||||||||||||
  Rat     4 LNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLE 68

  Fly    68 NVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNPLATAAGK 119
            ||||||||:|::||||||.|||||||:||||||||||||:||||||  .|||
  Rat    69 NVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL--IAGK 118

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmD2NP_649645.1 Sm_D2 23..112 CDD:212467 82/88 (93%)
Snrpd2NP_001102869.1 Sm_D2 24..113 CDD:212467 82/88 (93%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352688
Domainoid 1 1.000 144 1.000 Domainoid score I4485
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3381
Inparanoid 1 1.050 208 1.000 Inparanoid score I3611
OMA 1 1.010 - - QHG53765
OrthoDB 1 1.010 - - D1581611at2759
OrthoFinder 1 1.000 - - FOG0004313
OrthoInspector 1 1.000 - - otm45913
orthoMCL 1 0.900 - - OOG6_102323
Panther 1 1.100 - - LDO PTHR12777
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3049
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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