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Protein Alignment SmD2 and SNRPN
DIOPT Version :9
Sequence 1: | NP_649645.1 |
Gene: | SmD2 / 40781 |
FlyBaseID: | FBgn0261789 |
Length: | 119 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001365180.1 |
Gene: | SNRPN / 6638 |
HGNCID: | 11164 |
Length: | 244 |
Species: | Homo sapiens |
Alignment Length: | 114 |
Identity: | 28/114 - (24%) |
Similarity: | 53/114 - (46%) |
Gaps: | 38/114 - (33%) |
- Green bases have known domain annotations that are detailed below.
Fly 32 TQSVKNNTQVL------INC--RNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKP 88
:|:|..::::| :.| ::.:..:|..||||:|.|::|.:..|. :|:||
Human 4 SQTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEF-----------RKIKP 57
Fly 89 VN-------KDRFISKMFLRGDSVIL------------VLRNPLATAAG 118
.| :.|.:..:.|||::::. :.|.|||.|||
Human 58 KNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 106
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmD2 | NP_649645.1 |
Sm_D2 |
23..112 |
CDD:212467 |
22/106 (21%) |
SNRPN | NP_001365180.1 |
Sm_B |
9..87 |
CDD:212464 |
19/88 (22%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
User_Submission |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.810 |
|
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