DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmD2 and SNRPD1

DIOPT Version :9

Sequence 1:NP_649645.1 Gene:SmD2 / 40781 FlyBaseID:FBgn0261789 Length:119 Species:Drosophila melanogaster
Sequence 2:NP_008869.1 Gene:SNRPD1 / 6632 HGNCID:11158 Length:119 Species:Homo sapiens


Alignment Length:78 Identity:19/78 - (24%)
Similarity:33/78 - (42%) Gaps:17/78 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSV 105
            |.|..:|..::.|.:...|...|..|:.||       .|.|.::.|:       :..:.:||:::
Human    15 VTIELKNGTQVHGTITGVDVSMNTHLKAVK-------MTLKNREPVQ-------LETLSIRGNNI 65

  Fly   106 ---ILVLRNPLAT 115
               ||....||.|
Human    66 RYFILPDSLPLDT 78

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmD2NP_649645.1 Sm_D2 23..112 CDD:212467 16/73 (22%)
SNRPD1NP_008869.1 Sufficient for interaction with CLNS1A. /evidence=ECO:0000269|PubMed:11747828 1..80 19/78 (24%)
Sm_D1 2..93 CDD:212471 19/78 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 88..119
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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