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Protein Alignment SmD2 and Lsm6
DIOPT Version :9
Sequence 1: | NP_649645.1 |
Gene: | SmD2 / 40781 |
FlyBaseID: | FBgn0261789 |
Length: | 119 |
Species: | Drosophila melanogaster |
Sequence 2: | XP_038953847.1 |
Gene: | Lsm6 / 498934 |
RGDID: | 1561937 |
Length: | 98 |
Species: | Rattus norvegicus |
Alignment Length: | 82 |
Identity: | 19/82 - (23%) |
Similarity: | 32/82 - (39%) |
Gaps: | 8/82 - (9%) |
- Green bases have known domain annotations that are detailed below.
Fly 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVN- 90
|...|.|.: ...|::...:.....|.:...|.:.|:.||..:|......:...|...::..|
Rat 8 PSDFLKQII--GRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNG 70
Fly 91 ----KDRFIS-KMFLRG 102
.|:|:| |..|||
Rat 71 LEYTPDQFVSGKRILRG 87
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmD2 | NP_649645.1 |
Sm_D2 |
23..112 |
CDD:212467 |
19/82 (23%) |
Lsm6 | XP_038953847.1 |
LSm6 |
7..69 |
CDD:212473 |
11/62 (18%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.900 |
|
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