DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmD2 and SmD1

DIOPT Version :9

Sequence 1:NP_649645.1 Gene:SmD2 / 40781 FlyBaseID:FBgn0261789 Length:119 Species:Drosophila melanogaster
Sequence 2:NP_524774.1 Gene:SmD1 / 44668 FlyBaseID:FBgn0261933 Length:124 Species:Drosophila melanogaster


Alignment Length:78 Identity:19/78 - (24%)
Similarity:34/78 - (43%) Gaps:17/78 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSV 105
            |.|..:|..::.|.:...|...|..|::|:       .|.|.:   .||:    :..:.:||:::
  Fly    15 VTIELKNGTQIHGTITGVDVAMNTHLKSVR-------MTIKNR---DPVH----LETLSIRGNNI 65

  Fly   106 ---ILVLRNPLAT 115
               ||....||.|
  Fly    66 RYFILPDSLPLET 78

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmD2NP_649645.1 Sm_D2 23..112 CDD:212467 16/73 (22%)
SmD1NP_524774.1 Sm_D1 2..93 CDD:212471 19/78 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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