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Protein Alignment SmD2 and snrpd3
DIOPT Version :9
Sequence 1: | NP_649645.1 |
Gene: | SmD2 / 40781 |
FlyBaseID: | FBgn0261789 |
Length: | 119 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001002081.1 |
Gene: | snrpd3 / 415171 |
ZFINID: | ZDB-GENE-040625-55 |
Length: | 127 |
Species: | Danio rerio |
Alignment Length: | 93 |
Identity: | 17/93 - (18%) |
Similarity: | 40/93 - (43%) |
Gaps: | 21/93 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 27 PLSVLTQSVKNNTQVLINCRNN--KKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPV 89
|:.||.::..: ::.|..| :...|::...:.:.|..:.|: |...|.|:..:
Zfish 6 PIKVLHEAEGH----IVTCETNTGEVYRGKLIEAEDNVNCQMANI----TVTYRDGRVAQ----- 57
Fly 90 NKDRFISKMFLRGDSV-ILVLRNPLATA 116
:.::::||..: .|:|.:.|..|
Zfish 58 -----LEQVYIRGSKIRFLILPDMLKNA 80
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmD2 | NP_649645.1 |
Sm_D2 |
23..112 |
CDD:212467 |
15/87 (17%) |
snrpd3 | NP_001002081.1 |
Sm_D3 |
6..75 |
CDD:212468 |
15/86 (17%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
ZFIN |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.900 |
|
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