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Protein Alignment SmD2 and snrpb
DIOPT Version :9
Sequence 1: | NP_649645.1 |
Gene: | SmD2 / 40781 |
FlyBaseID: | FBgn0261789 |
Length: | 119 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001001198.1 |
Gene: | snrpb / 407857 |
XenbaseID: | XB-GENE-5877283 |
Length: | 237 |
Species: | Xenopus tropicalis |
Alignment Length: | 112 |
Identity: | 27/112 - (24%) |
Similarity: | 50/112 - (44%) |
Gaps: | 32/112 - (28%) |
- Green bases have known domain annotations that are detailed below.
Fly 26 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVN 90
|..|.:.|.:....:.:: ::.:..:|..||||:|.|::|.:..|. :|:||.|
Frog 4 GKSSKMLQHIDYRMRCIL--QDGRIFIGTFKAFDKHMNLILCDCDEF-----------RKIKPKN 55
Fly 91 -------KDRFISKMFLRGDSVIL------------VLRNPLATAAG 118
:.|.:..:.|||::::. :.|.|||.|||
Frog 56 SKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmD2 | NP_649645.1 |
Sm_D2 |
23..112 |
CDD:212467 |
21/104 (20%) |
snrpb | NP_001001198.1 |
Sm_B |
5..83 |
CDD:212464 |
19/90 (21%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.910 |
|
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