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Protein Alignment SmD2 and SmB
DIOPT Version :9
Sequence 1: | NP_649645.1 |
Gene: | SmD2 / 40781 |
FlyBaseID: | FBgn0261789 |
Length: | 119 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001188780.1 |
Gene: | SmB / 34426 |
FlyBaseID: | FBgn0262601 |
Length: | 199 |
Species: | Drosophila melanogaster |
Alignment Length: | 77 |
Identity: | 22/77 - (28%) |
Similarity: | 42/77 - (54%) |
Gaps: | 7/77 - (9%) |
- Green bases have known domain annotations that are detailed below.
Fly 38 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGK-KKVKPVNKDRFISKMFLR 101
|.:|.|..::::..:|..||||:|.|::|.:.:|. |..:.| .||....:.|.:..:.||
Fly 14 NYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEF-----RKIRSKNSKVPEREEKRVLGFVLLR 73
Fly 102 GDSVI-LVLRNP 112
|:::: |.:..|
Fly 74 GENIVSLTVEGP 85
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmD2 | NP_649645.1 |
Sm_D2 |
23..112 |
CDD:212467 |
21/75 (28%) |
SmB | NP_001188780.1 |
Sm_B |
5..82 |
CDD:212464 |
21/72 (29%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.810 |
|
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