DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmD2 and Lsm3

DIOPT Version :10

Sequence 1:NP_649645.1 Gene:SmD2 / 40781 FlyBaseID:FBgn0261789 Length:119 Species:Drosophila melanogaster
Sequence 2:NP_001100081.1 Gene:Lsm3 / 297455 RGDID:1305971 Length:102 Species:Rattus norvegicus


Alignment Length:92 Identity:29/92 - (31%)
Similarity:56/92 - (60%) Gaps:5/92 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 EEEEFNT--GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGK 81
            :::..||  .||.::..|:  :.::.:..||:::|.||:.|:|:|.||:|.:|:|..|.:....:
  Rat     7 QQQTTNTVEEPLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEE 69

  Fly    82 GKKKVKPVNKDRFISKMFLRGDSVILV 108
            ..:::....| |.|..:|:|||.|:||
  Rat    70 TYEEIYKSTK-RNIPMLFVRGDGVVLV 95

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmD2NP_649645.1 Sm_D2 23..112 CDD:212467 29/88 (33%)
Lsm3NP_001100081.1 LSm3 16..97 CDD:212477 27/83 (33%)

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