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Protein Alignment SmD2 and Lsm10
DIOPT Version :9
Sequence 1: | NP_649645.1 |
Gene: | SmD2 / 40781 |
FlyBaseID: | FBgn0261789 |
Length: | 119 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001156738.1 |
Gene: | Lsm10 / 116748 |
MGIID: | 2151045 |
Length: | 122 |
Species: | Mus musculus |
Alignment Length: | 76 |
Identity: | 17/76 - (22%) |
Similarity: | 31/76 - (40%) |
Gaps: | 9/76 - (11%) |
- Green bases have known domain annotations that are detailed below.
Fly 19 EEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV--KEMW------TE 75
:|...:...|.:|.|.::... ..::.|:.....||:...|...|:.|.|| .:.| .:
Mouse 8 KERTISENSLIILLQGLQGQI-TTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDD 71
Fly 76 LPRTGKGKKKV 86
|..||:..:.|
Mouse 72 LFVTGRNVRYV 82
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmD2 | NP_649645.1 |
Sm_D2 |
23..112 |
CDD:212467 |
16/72 (22%) |
Lsm10 | NP_001156738.1 |
LSm10 |
8..85 |
CDD:212480 |
17/76 (22%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.900 |
|
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