DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmD2 and lsm3

DIOPT Version :10

Sequence 1:NP_649645.1 Gene:SmD2 / 40781 FlyBaseID:FBgn0261789 Length:119 Species:Drosophila melanogaster
Sequence 2:NP_001373759.1 Gene:lsm3 / 100535720 ZFINID:ZDB-GENE-161207-2 Length:102 Species:Danio rerio


Alignment Length:93 Identity:29/93 - (31%)
Similarity:57/93 - (61%) Gaps:5/93 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 QEEEEFNT--GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTG 80
            ::::..||  .||.::..|:  :.::.:..||:::|.||:.|:|:|.||:|.:|:|..|.:....
Zfish     6 EQQQTTNTVEEPLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDE 68

  Fly    81 KGKKKVKPVNKDRFISKMFLRGDSVILV 108
            :..:::....| |.|..:|:|||.|:||
Zfish    69 ETYEEIYKSTK-RNIPMLFVRGDGVVLV 95

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmD2NP_649645.1 Sm_D2 23..112 CDD:212467 29/88 (33%)
lsm3NP_001373759.1 LSm3 16..97 CDD:212477 27/83 (33%)

Return to query results.
Submit another query.