DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rm62 and Ddx50

DIOPT Version :9

Sequence 1:NP_524243.2 Gene:Rm62 / 40739 FlyBaseID:FBgn0003261 Length:719 Species:Drosophila melanogaster
Sequence 2:NP_444413.1 Gene:Ddx50 / 94213 MGIID:2182303 Length:734 Species:Mus musculus


Alignment Length:782 Identity:193/782 - (24%)
Similarity:298/782 - (38%) Gaps:243/782 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 DSIPKAEQRTRTRKSLFNDPDERTEEIKIEGVMAPHDRDFGHSGRGGRGGDRGGDDRRGGGGGGN 177
            :|..|..|::..|||..:...|...|.:..||  ..|.|.....:........||.:.     |.
Mouse    21 ESQRKERQKSDRRKSRHHSESEERTETRENGV--TDDLDAPKPKKAKMREKLNGDTKE-----GL 78

  Fly   178 RFGGGGGGGDYHGIRNGRVEKRRDDRGGGNRFGGGGGFGDRRGGGGGGSQDLPMRPVDFSNLAPF 242
            ||.                    |:....::        .||       :|||...||       
Mouse    79 RFS--------------------DEFSPSHK--------SRR-------KDLPNGDVD------- 101

  Fly   243 KKNFYQEHPNVANRSPYEVQRYREEQEITVRGQVPNPIQDFSEVHLPDYVMKEIRRQG--YKAPT 305
               .|::.....:.|....:...:.:|...|.|......:||   :.:..:|.::.:|  |..|.
Mouse   102 ---EYEKRSKRVSSSENSHKSSDKAEETLTREQKEGAFSNFS---ISEETIKLLKGRGVTYLFPI 160

  Fly   306 AIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHI-NNQQPLQRGDGPIALVLAPTRELAQQ 369
            .::..| |: ..|.:.:..|:||:|||..:.:|.|..: .||:.:::...|..||||||||||  
Mouse   161 QVKTFG-PV-YEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELA-- 221

  Fly   370 IQQVATEFGS-SSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLV 433
             .|||.:|.. :..:...|.:||.....|:..::.|.:|::.||||:.|.|.:|..:|.:..::|
Mouse   222 -NQVAKDFKDITRKLSVACFYGGTSYQSQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVV 285

  Fly   434 LDEADRMLDMGFEPQIRKIV-------SQIRPDRQTLMWSATWPKEVKQLAEDFL-GNYIQIN-I 489
            |||.|:|||:||..|:..|:       |:..|  |||::|||.|:.|.::|:.:: ..|.|:: :
Mouse   286 LDEVDQMLDLGFAEQVEDIIHESYKTDSEDNP--QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 348

  Fly   490 GSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVR--FIRS 552
            |.:...|...:..:...|....:...:..:| .:|..||  |:.|||.|||:.|..:..  .|:.
Mouse   349 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVL-QVYSGSE--GRAIIFCETKKNVTEMAMNPHIKQ 410

  Fly   553 FGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHR 617
             ..:|  :|||.:||:|:..|:.||.|...:||||:|||||||:..:..||....||:.|.||||
Mouse   411 -NAQC--LHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHR 472

  Fly   618 IGRTGRSNTKGTSFAFF------------------------------TKNNAKQA---------- 642
            .|||||:...|....|:                              .|:.:..|          
Mouse   473 SGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA 537

  Fly   643 ---------------KALVDVL------------------------------------------- 649
                           |..||.|                                           
Mouse   538 AVDFFRPSAQRLIEEKGAVDALAAALAHISGASSFEPRSLITSDKGFVTMTLESPEEIQDVSCAW 602

  Fly   650 REANQEIN------------------------------------------------PALE----- 661
            :|.|::::                                                |.:|     
Mouse   603 KELNRKLSSNAVSHVTRMCLLKGNMGVCFDVPTSESERLQAEWHDSDWILSVPAKLPEIEEYYDG 667

  Fly   662 NLARNSRYDGG--GGRS----RYGG--GGGGGRFGGGGFKKGSLSNGRGFGGGGGGGGEGRHSR- 717
            |.:.|.|...|  ||||    |.||  ||..||....|.:.||..:||...|.......|.|.| 
Mouse   668 NTSSNPRQRSGWSGGRSGRSGRSGGRSGGRSGRQSRQGSRSGSRQDGRRRSGNRNRSRSGGHKRN 732

  Fly   718 FD 719
            ||
Mouse   733 FD 734

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rm62NP_524243.2 PTZ00424 280..656 CDD:185609 135/488 (28%)
DEADc 283..488 CDD:238167 73/216 (34%)
HELICc 499..633 CDD:238034 51/135 (38%)
Ddx50NP_444413.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..131 29/161 (18%)
SrmB 130..608 CDD:223587 136/493 (28%)
Q motif 134..162 6/30 (20%)
DEADc 136..339 CDD:238167 71/212 (33%)
DEVD box 287..290 2/2 (100%)
HELICc 369..486 CDD:238034 50/122 (41%)
GUCT_RHII_Gualpha_beta 565..656 CDD:240593 2/90 (2%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 664..734 24/69 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0331
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53695
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.