DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rm62 and PRP5

DIOPT Version :9

Sequence 1:NP_524243.2 Gene:Rm62 / 40739 FlyBaseID:FBgn0003261 Length:719 Species:Drosophila melanogaster
Sequence 2:NP_009796.1 Gene:PRP5 / 852539 SGDID:S000000441 Length:849 Species:Saccharomyces cerevisiae


Alignment Length:750 Identity:214/750 - (28%)
Similarity:343/750 - (45%) Gaps:139/750 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 ISPRSGASSEKCITQRRHFLFSSASSSGTFASSSSLCTEQRQQFHGSRRNRETI-LFPSTYSSLQ 93
            |..:...:.|..:.:||..|.........|.:.....|.:......|...::|. .|......::
Yeast     4 IDSKQNINRESLLEERRKKLAKWKQKKAQFDAQKEHQTSRNDIVTNSLEGKQTTEKFTERQERVK 68

  Fly    94 AQSQR---AFRDSSKPDSDDYVDSIPKAEQRTRTRKSL---FNDPDERTEEIKI-----EGVM-A 146
            .:.::   .||.|.:|.|   |....|..:|::.:|.:   |:|.|:  .||.:     |.:. |
Yeast    69 EELRKRKNEFRKSDEPVS---VKPSKKKSKRSKVKKKISFDFSDDDD--SEIGVSFRSKEHIQKA 128

  Fly   147 P-HDR------DFGHSGRGGR-GGDRGGDDRRGGGGGGNRFGGGGGGGDYHGIRNGRVEKRRDDR 203
            | ||.      :|..|.:..: ...:|..||                ||...:.:...|.     
Yeast   129 PEHDNEKDPLDEFMTSLKEEKMSNSKGMYDR----------------GDILDVEDQLFEL----- 172

  Fly   204 GGGNRFGGGGGFGDRRGGGGGGSQDLPMRPVDFSNLA----------------------PFKKNF 246
                              ||...:|:... .|.||:|                      ||:|||
Yeast   173 ------------------GGTDDEDVEDN-TDNSNIAKIAKLKAKKRVKQIYYSPEELEPFQKNF 218

  Fly   247 YQEHPNVANRSPYEVQRYR-EEQEITVRGQ-VPNPIQDFSEVHL-PDYVMKEIRRQGYKAPTAIQ 308
            |.|...|::.|..||:..| ....|.::|. .|.|:..:|::.| .|.::....:..:.:.|.||
Yeast   219 YIESETVSSMSEMEVEELRLSLDNIKIKGTGCPKPVTKWSQLGLSTDTMVLITEKLHFGSLTPIQ 283

  Fly   309 AQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGD-GPIALVLAPTRELAQQIQQ 372
            :|..|..|||.:.:||:|||||||:.|:||.:..:..|:||.:.: ||:.|:||||||||.||.:
Yeast   284 SQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPTRELALQIHE 348

  Fly   373 VATEF-GSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNL---KRCTYLV 433
            ..|:| .:.:.:|:.|..||:....|:.||:||.|||:|||||.||.|:.....|   ||.|::|
Yeast   349 EVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGKLLSTKRITFVV 413

  Fly   434 LDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANH 498
            :|||||:.|:||||||.:|:..:|||:|.:::|||:|.:::..|...|.:.|.|.|.|..: .|.
Yeast   414 MDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSFAVRVLHSPISITINSKGM-VNE 477

  Fly   499 NIRQVVDVCDEFSKEEKLKTLLSDIY------------------DTSESPGKIIIFVETKRRVDN 545
            |::|...:|  .|::||...|:..|:                  |..|...|.||||.::...|.
Yeast   478 NVKQKFRIC--HSEDEKFDNLVQLIHERSEFFDEVQSENDGQSSDVEEVDAKAIIFVSSQNICDF 540

  Fly   546 LVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQN 610
            :.:.:.:.|:...|||..|...||...|.:|:..|::||:.|:|.:|||:|..:..||.::..:.
Yeast   541 ISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKT 605

  Fly   611 SEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLR-EANQEINP--ALENLARNSRYDGG 672
            ...|:|..|||.|.:..||:......:....|..|...:| |..:.::|  |.|....:::::  
Yeast   606 FAQYVHTTGRTARGSRSGTAITLLLHDELSGAYILSKAMRDEEIKALDPLQAKELQEMSAKFE-- 668

  Fly   673 GGRSRYGGGGGGGRFGGGGFKKGSLSNGRGFGGGG 707
                             .|.|||.....:||||.|
Yeast   669 -----------------SGMKKGKFRLSKGFGGKG 686

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rm62NP_524243.2 PTZ00424 280..656 CDD:185609 142/400 (36%)
DEADc 283..488 CDD:238167 90/210 (43%)
HELICc 499..633 CDD:238034 44/151 (29%)
PRP5NP_009796.1 SrmB 227..731 CDD:223587 161/481 (33%)
DEADc_DDX46 244..468 CDD:350711 93/223 (42%)
KH-I_PRP5_like 749..837 CDD:411902
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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