DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rm62 and AT1G20920

DIOPT Version :9

Sequence 1:NP_524243.2 Gene:Rm62 / 40739 FlyBaseID:FBgn0003261 Length:719 Species:Drosophila melanogaster
Sequence 2:NP_001322011.1 Gene:AT1G20920 / 838685 AraportID:AT1G20920 Length:1166 Species:Arabidopsis thaliana


Alignment Length:644 Identity:222/644 - (34%)
Similarity:340/644 - (52%) Gaps:85/644 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 QAQSQRAFRDSSKPDSDDYVDSIPKAEQRTRTRKSLFNDPDERTEEIK-----IEGVMAPHDRDF 152
            :::::....:.:||::|.....:....:...|......|.....|||.     :..::.|....|
plant   334 KSETEMDVDEETKPENDGDAKMVDLENETAATVSESGGDGAVDEEEIDPLDAFMNTMVLPEVEKF 398

  Fly   153 GHSGRGGRGGDRGGDDRRGGGGGGNR------------FGGGGGGGDYHGIRNG----------- 194
            .:........|...|.:..|...|:|            ..|.....||...:|.           
plant   399 CNGAPPPAVNDGTLDSKMNGKESGDRPKKGFNKALGRIIQGEDSDSDYSEPKNDDDPSLDEDDEE 463

  Fly   195 ---RVEKRRDDRGGGNRFGGGGGFGDRRGGGGGGSQDLPMRPVDFSNL--APFKKNFYQEHPNVA 254
               ||:|.:.::                           :..||.|.:  .||:||||.|..:::
plant   464 FMKRVKKTKAEK---------------------------LSLVDHSKIEYEPFRKNFYIEVKDIS 501

  Fly   255 NRSPYEVQRYREEQEITVRGQ-VPNPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSG 318
            ..:..||..||:|.|:.|.|: ||.||:.:.:..|...::..:::..|:.|..||.|..||.|||
plant   502 RMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSG 566

  Fly   319 SNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYV 383
            .:.:|:||||||||||::||.:.||.:|.|::.|||||.||:||||||.|||.....:|.....:
plant   567 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGI 631

  Fly   384 RNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGS---TNLKRCTYLVLDEADRMLDMGF 445
            |...|:||:....|:.:|:||.|||:.||||:||.|...|   |||:|.|:||:||||||.||||
plant   632 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGF 696

  Fly   446 EPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEF 510
            ||||.:|:..|||:|||:::|||:|::|:.||...|...::|.:|...: .|.:|.|:|:|..|.
plant   697 EPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPES 760

  Fly   511 SKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLRE 575
            .:..:|..||.   :.||. |||::||:::.:.|.|.|.:......|.::||.|.|::|:..:.:
plant   761 DRFLRLLELLG---EWSEK-GKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISD 821

  Fly   576 FRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAK 640
            |::...|:|:||.||||||||..::.|:|||.|.:.|||:||:|||||:..||.:..|.::::||
plant   822 FKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAK 886

  Fly   641 QAKALVDVLREANQEINPALENLARNSRYDG------GGGRSRYGGGGGGGRFGGGGFK 693
            .|..||..|..:.|.:...|:.||     ||      .|....:|.|     :||.|||
plant   887 YAPDLVKALELSEQPVPDDLKALA-----DGFMVKVKQGIEQAHGTG-----YGGSGFK 935

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rm62NP_524243.2 PTZ00424 280..656 CDD:185609 166/378 (44%)
DEADc 283..488 CDD:238167 100/207 (48%)
HELICc 499..633 CDD:238034 54/133 (41%)
AT1G20920NP_001322011.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D245118at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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