DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rm62 and AT5G14610

DIOPT Version :10

Sequence 1:NP_524243.2 Gene:Rm62 / 40739 FlyBaseID:FBgn0003261 Length:719 Species:Drosophila melanogaster
Sequence 2:NP_196965.2 Gene:AT5G14610 / 831313 AraportID:AT5G14610 Length:712 Species:Arabidopsis thaliana


Alignment Length:643 Identity:255/643 - (39%)
Similarity:336/643 - (52%) Gaps:149/643 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 GRGGDRGGDDRRGGGGGGNRFGGGGGGGDYHGIRNGRVEKRRDDRGGGNRFGGGGGFGDRRGGGG 223
            |||.|....|      .|:||...|        |.|.:.......|.||...||   ...||   
plant    84 GRGSDGPKSD------SGSRFNEAG--------RTGPISSNDAASGLGNASSGG---SSARG--- 128

  Fly   224 GGSQDLPMRPVDFSNLAPFKKNFYQEHPNVANRSPYEVQRYREEQEITVR-GQVPNPIQDFSEVH 287
                  |......:.|:|                    :.|..:.||||. ||||.|:..|....
plant   129 ------PPSSAAGNELSP--------------------EAYCRKHEITVSGGQVPPPLMSFEATG 167

  Fly   288 LPDYVMKE--------------------------------------------------------- 295
            ||:.:::|                                                         
plant   168 LPNELLRECPNFMPYALSFVPGAIFALGGANVVRCATSLGFLQIIWSALFGGPNFLRCPPAAGFN 232

  Fly   296 -----------IRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVH---INNQ 346
                       :...|:.||:.||||.|||||...:.|.||||||||||||::|..:|   |:|.
plant   233 SYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHND 297

  Fly   347 QPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIAT 411
            ..:    ||..|||:||||||.|||..|.:||.||.:...|::||||||.|:::::||.:||:||
plant   298 SRM----GPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVAT 358

  Fly   412 PGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQL 476
            ||||.|.|.....:|.:.:|||||||||||||||||||||||:::...|||||::|||||||:::
plant   359 PGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKI 423

  Fly   477 AEDFLGNYIQINIGSL-ELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPG-KIIIFVET 539
            |.|.|.|..|:|||:: ||.||.:|.|.::|.....|..:|:.:|     .|:.|| |||||..|
plant   424 AADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQIL-----RSQEPGSKIIIFCST 483

  Fly   540 KRRVDNLVR-FIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVI 603
            ||..|.|.| ..|:||  ..||||||||:|||.||.:||||::.:|||||||||||||..|:.|:
plant   484 KRMCDQLARNLTRTFG--AAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVV 546

  Fly   604 NFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNSR 668
            |:|:|...|||:||||||||:...|.::.||...:||.|..|:.:|..|||::.|.:..:|..  
plant   547 NYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATR-- 609

  Fly   669 YDGGGGRSRY--------GGGGGGGRFGGGGF----KKGSLSNG-RGFGGGGGGGGEG 713
              ||||.:::        |||||.|.:|..|:    :.|..|.| .|:||.|..||.|
plant   610 --GGGGMNKFRRWGTPSSGGGGGRGGYGDSGYGGRGESGYGSRGDSGYGGRGDSGGRG 665

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rm62NP_524243.2 DEAD-like_helicase_N 231..669 CDD:475120 214/512 (42%)
AT5G14610NP_196965.2 WW 17..47 CDD:459800
SrmB 247..603 CDD:440279 197/366 (54%)
Blue background indicates that the domain is not in the aligned region.

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