DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rm62 and AT3G09620

DIOPT Version :9

Sequence 1:NP_524243.2 Gene:Rm62 / 40739 FlyBaseID:FBgn0003261 Length:719 Species:Drosophila melanogaster
Sequence 2:NP_001327248.1 Gene:AT3G09620 / 820119 AraportID:AT3G09620 Length:990 Species:Arabidopsis thaliana


Alignment Length:702 Identity:225/702 - (32%)
Similarity:340/702 - (48%) Gaps:157/702 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 EQRQQFHGSRRNRETILFPSTYSSLQAQSQRAFRDSSKP----------DSDDYVDSIPKAEQRT 122
            ||:|......:.|..:   ..:..|:.|::.|..:|..|          :|||.|.|..:.:...
plant   154 EQKQLAEEVEKRRRRV---QEWQELKRQNEEAQIESKGPETGKAWTLDGESDDEVKSDSEMDVDR 215

  Fly   123 RTRKSLFNDPD-------------------------------------------ERTEEIKIEGV 144
            .|:  |.|..|                                           |:...|.|:|:
plant   216 DTK--LENGGDAKMVASENETAVTVSENGGDRAADEDEIDPLDAFMNTMVLPEVEKLSNIVIDGI 278

  Fly   145 MAPHDRDFGHSGRGGRGGDRGGDDRRGG---GGGGNRFGGGGGGGDYHGIRNG------------ 194
            :     ||..:|:      ..||..:.|   ...|....|.....||...::.            
plant   279 L-----DFKMNGK------ETGDQAKKGFNKAALGRIIQGEDSDSDYSEPKSDDDPSLDEDDEEF 332

  Fly   195 --RVEKRRDDRGGGNRFGGGGGFGDRRGGGGGGSQDLPMRPVDFSNL--APFKKNFYQEHPNVAN 255
              ||:|.:.::                           :..||.|.:  .||:||||.|..:::.
plant   333 MKRVKKTKAEK---------------------------LSLVDHSKIEYEPFRKNFYIEVKDISR 370

  Fly   256 RSPYEVQRYREEQEITVRGQ-VPNPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGS 319
            .:...|..||:|.|:.|.|: ||.|||.:.:..|...::..:::..|:.|..||||..||.|||.
plant   371 MTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGR 435

  Fly   320 NFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVR 384
            :.:|:||||||||||::||.:.||.:|.|::.|||||.||:||||||.|||.....:|..:..:.
plant   436 DCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGII 500

  Fly   385 NTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGS---TNLKRCTYLVLDEADRMLDMGFE 446
            ...|:||:....|:.:|:||.|||:.||||:||.|...|   |||:|.||||:||||||.|||||
plant   501 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFE 565

  Fly   447 PQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFS 511
            |||.:||..|||||||:::|||:|::|:.||...|...::|.:|...: .|.:|.|:|::..|..
plant   566 PQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSV-VNKDITQLVEIRPESE 629

  Fly   512 KEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREF 576
            :..:|..||.:.|:    .||:::||.::                      :||       :.:|
plant   630 RFSRLLELLGEWYE----KGKVLVFVRSQ----------------------EKS-------ISDF 661

  Fly   577 RSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ 641
            :|...|:|:||.||||||||..::.|:|||.|.:.|||:||:|||||:..||.:..|.::::||.
plant   662 KSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKY 726

  Fly   642 AKALVDVLREANQEINPALENLARNSRYDGGGGRSRYGGGGGGGRFGGGGFK 693
            |..||..|..:.|.:...::.:|.........|..:..|.|    :||.|||
plant   727 APDLVKALELSEQPVPDDVKAVAEGFMAKVKQGIEQAHGTG----YGGSGFK 774

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rm62NP_524243.2 PTZ00424 280..656 CDD:185609 161/378 (43%)
DEADc 283..488 CDD:238167 103/207 (50%)
HELICc 499..633 CDD:238034 45/133 (34%)
AT3G09620NP_001327248.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D245118at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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