DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rm62 and DDX39B

DIOPT Version :10

Sequence 1:NP_524243.2 Gene:Rm62 / 40739 FlyBaseID:FBgn0003261 Length:719 Species:Drosophila melanogaster
Sequence 2:NP_004631.1 Gene:DDX39B / 7919 HGNCID:13917 Length:428 Species:Homo sapiens


Alignment Length:379 Identity:115/379 - (30%)
Similarity:196/379 - (51%) Gaps:28/379 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   290 DYVMK-EIRRQ----GYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPL 349
            |:::| |:.|.    |::.|:.:|.:..|.|:.|.:.:..||:|.|||..::|..:      |.|
Human    49 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL------QQL 107

  Fly   350 QRGDGPIA-LVLAPTRELAQQIQQVATEFGSSSYVRNTCV---FGGAPKGGQMRDLQRGC-EIVI 409
            :...|.:: ||:..|||||.||.:....|  |.|:.|..|   |||.........|::.| .||:
Human   108 EPVTGQVSVLVMCHTRELAFQISKEYERF--SKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVV 170

  Fly   410 ATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLD-MGFEPQIRKIVSQIRPDRQTLMWSATWPKEV 473
            .||||::......|.|||...:.:|||.|:||: :.....:::|......::|.:|:|||..||:
Human   171 GTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEI 235

  Fly   474 KQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVE 538
            :.:...|:.:.::|.:........|.::|......:..|..||..|| |:.:.::    ::|||:
Human   236 RPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLL-DVLEFNQ----VVIFVK 295

  Fly   539 TKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVI 603
            :.:|...|.:.:........|||....|.||....::|:..:..|||||::..||:|::.:....
Human   296 SVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF 360

  Fly   604 NFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEIN 657
            |:|.|::|:.|:||:.|.||..|||.:..|.:..|  .||.|.||  :...|:|
Human   361 NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN--DAKILNDV--QDRFEVN 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rm62NP_524243.2 DEAD-like_helicase_N 231..669 CDD:475120 115/379 (30%)
DDX39BNP_004631.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31
DEADc_DDX39 44..251 CDD:350708 65/209 (31%)
Q motif 45..73 6/23 (26%)
DECD box 196..199 2/2 (100%)
SF2_C_DEAD 262..391 CDD:350174 40/133 (30%)
Blue background indicates that the domain is not in the aligned region.

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