DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rm62 and Ddx21

DIOPT Version :9

Sequence 1:NP_524243.2 Gene:Rm62 / 40739 FlyBaseID:FBgn0003261 Length:719 Species:Drosophila melanogaster
Sequence 2:NP_062426.2 Gene:Ddx21 / 56200 MGIID:1860494 Length:851 Species:Mus musculus


Alignment Length:695 Identity:187/695 - (26%)
Similarity:300/695 - (43%) Gaps:128/695 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 GTFASSSSLCTEQRQQFHGSRRNRETILFPS----------------TYSSLQAQSQRAFRDSSK 105
            |...|.:.|.::      |:..:.||:..||                |....:|.|.:|.:.:.|
Mouse     3 GKLRSGAKLGSD------GAEESMETLPKPSEKKTRKEKTKSKTEEATEGMEEAVSSKAKKTNKK 61

  Fly   106 PDSDDYVDSIPKAEQ----------------RTRTRKS--LFNDPDERTEEIKIEGVMAPHDRDF 152
            ..|:|.||. ||:.:                :|..:|.  |....|..|:|| |....:..:.|.
Mouse    62 GPSEDDVDP-PKSRKAKKQEEEPQDDTASTSKTSKKKKEPLEKQADSETKEI-ITEEPSEEEADM 124

  Fly   153 GHSGRGGRGGDRGGDDRRGGGGGGNRFGGGGGGGDYHGIRNG---------RVEKRRDDRGGGNR 208
            ....:..:|.:..||                .|.....::||         .:.|.:..:.|...
Mouse   125 PKPKKMKKGKEANGD----------------AGEKSPKLKNGLSQPSEEEADIPKPKKMKKGKEA 173

  Fly   209 FGGGGGFGDR-RGGGGGGSQ---DLPMRPV----------DFSNLAP-FKKNFYQEHPNVANRS- 257
            .|..|....: :.|....|:   |:| :|.          |....:| .|....|.....:|.| 
Mouse   174 NGDAGEKSPKLKNGLSQPSEEEVDIP-KPKKMKKGKEASGDAGEKSPRLKDGLSQPSEPKSNSSD 237

  Fly   258 -PYEVQRYREEQEITVRGQVPNPIQD----FSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMS 317
             |.|......|:||        |::.    ||...:.:..:|.::.:|......|||:.:....|
Mouse   238 APGEESSSETEKEI--------PVEQKEGAFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYS 294

  Fly   318 GSNFVGIAKTGSGKTLGYILPAIVHI-NNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSS 381
            |.:.:..|:||:|||..:.:|.|..: ...|..:||..|..||||||||||.|:.:..::.....
Mouse   295 GKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKL 359

  Fly   382 YVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFE 446
            .|  .|.:||.|.|||:..::.|.:|::.||||:.|.|..|..:|.:..::||||.|:||||||.
Mouse   360 SV--ACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFA 422

  Fly   447 PQIRKIV-------SQIRPDRQTLMWSATWPKEVKQLAEDFL-GNYIQIN-IGSLELSANHNIRQ 502
            .|:.:|:       |:..|  |||::|||.|..|..:|:.:: ..|.|:: ||.....|...:..
Mouse   423 DQVEEILCVAYKKDSEDNP--QTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEH 485

  Fly   503 VVDVCDEFSKEEKLKTLLSDIYDT-SESPGKIIIFVETKRRVDNLVR--FIRSFGVRCGAIHGDK 564
            :...|....:    ..::.|:... |...|:.|||.|||:....|.:  .|:.   ...::|||.
Mouse   486 LAIKCHWTER----AAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ---DAQSLHGDI 543

  Fly   565 SQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGT 629
            .|.:|:..|:.||:|...:||||:|||||||:..:..|:....|::.|.||||.|||||:...|.
Mouse   544 PQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGV 608

  Fly   630 SFAFFTKNNAKQAKALVDVLREANQEIN----PALENLARNSRYD 670
            ...|:..   |:...|..|.::|..:..    |:...:.:.|..|
Mouse   609 CICFYQN---KEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKD 650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rm62NP_524243.2 PTZ00424 280..656 CDD:185609 129/392 (33%)
DEADc 283..488 CDD:238167 76/213 (36%)
HELICc 499..633 CDD:238034 45/136 (33%)
Ddx21NP_062426.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..260 55/289 (19%)
3 X 37 AA tandem repeats 117..227 19/126 (15%)
PRK01297 191..633 CDD:234938 145/464 (31%)
Q motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU00552 258..286 5/27 (19%)
DEADc 260..467 CDD:238167 74/210 (35%)
DEAD box. /evidence=ECO:0000255|PROSITE-ProRule:PRU00541 411..414 2/2 (100%)
HELICc 501..610 CDD:238034 44/111 (40%)
GUCT_RHII_Gualpha_beta 689..781 CDD:240593
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 783..851
AdoMet_MTases 794..>840 CDD:302624
3 X 5 AA repeats 807..833
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0331
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53695
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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