DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rm62 and Ddx5

DIOPT Version :10

Sequence 1:NP_524243.2 Gene:Rm62 / 40739 FlyBaseID:FBgn0003261 Length:719 Species:Drosophila melanogaster
Sequence 2:NP_001007614.1 Gene:Ddx5 / 287765 RGDID:619906 Length:615 Species:Rattus norvegicus


Alignment Length:560 Identity:317/560 - (56%)
Similarity:376/560 - (67%) Gaps:64/560 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 DRDFGHSGRGGRGGDRGGDDRRGGGGGGNRFGGGGGGGDYHGIRNGRVEKRRDDRGGGNRFGGGG 213
            |||        ||.||        |.|..||||.         |.|.:        .|.:||..|
  Rat     7 DRD--------RGRDR--------GFGAPRFGGS---------RTGPL--------SGKKFGNPG 38

  Fly   214 GFGDRRGGGGGGSQDLPMRPVDFSNLAPFKKNFYQEHPNVANRSPYEVQRYREEQEITVRG-QVP 277
                         :.|..:..:...|..|:||||||||::|.|:..||..||..:|||||| ..|
  Rat    39 -------------EKLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVDTYRRSKEITVRGHNCP 90

  Fly   278 NPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVH 342
            .|:.:|.|.:.|..||..|.||.:..||||||||||:|:||.:.||:|:|||||||.|:||||||
  Rat    91 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 155

  Fly   343 INNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEI 407
            ||:|..|:||||||.||||||||||||:||||.|:..:..:::||::||||||.|:|||:||.||
  Rat   156 INHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEI 220

  Fly   408 VIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKE 472
            .|||||||||||..|.|||:|.||||||||||||||||||||||||.||||||||||||||||||
  Rat   221 CIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 285

  Fly   473 VKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFV 537
            |:|||||||.:||.||||:|||||||||.|:||||.:..|:|||..|:.:|  .||...|.|:||
  Rat   286 VRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEI--MSEKENKTIVFV 348

  Fly   538 ETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYV 602
            |||||.|.|.|.:|..|.....|||||||.|||:||.||:.||:.||:|||||:|||||:.:|:|
  Rat   349 ETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFV 413

  Fly   603 INFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNS 667
            ||:|||.:|||||||||||.||...||::.|||.||.||...|:.|||||||.|||.|..|..  
  Rat   414 INYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVE-- 476

  Fly   668 RYDGGGGRSRYGGGGGG------GRFGGGGFKKGSLSNGR 701
              |.|.||||   |.||      .|:..|  |:|..:..|
  Rat   477 --DRGSGRSR---GRGGMKDDRRDRYSAG--KRGGFNTFR 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rm62NP_524243.2 DEAD-like_helicase_N 231..669 CDD:475120 283/438 (65%)
Ddx5NP_001007614.1 DEAD-like_helicase_N 6..507 CDD:475120 316/556 (57%)
P68HR 498..532 CDD:429808 4/14 (29%)
P68HR 551..583 CDD:429808
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.