DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rm62 and dbp3

DIOPT Version :9

Sequence 1:NP_524243.2 Gene:Rm62 / 40739 FlyBaseID:FBgn0003261 Length:719 Species:Drosophila melanogaster
Sequence 2:NP_596388.1 Gene:dbp3 / 2540213 PomBaseID:SPBC17D1.06 Length:578 Species:Schizosaccharomyces pombe


Alignment Length:426 Identity:181/426 - (42%)
Similarity:250/426 - (58%) Gaps:29/426 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 NVANRSPYEV-QRYREEQEITVRGQVPN----PIQDFSEVHLPDYVMKEIRR--QGYKAPTAIQA 309
            |.:|.:..|. .||.::..|:......:    ||..|.|:.    |..::|.  :.||.||.|||
pombe   133 NASNHNDEEAYDRYIKKHNISFADPKSSENLLPILQFDELD----VSAKLREGLKNYKEPTPIQA 193

  Fly   310 QGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVA 374
            ..||..::|.:.||||:||||||:.:.:||:.::|...  .....|..||::||||||.|..:..
pombe   194 ATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLS--DNKSVPRVLVVSPTRELAIQTYENL 256

  Fly   375 TEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADR 439
            ......:.::...|:|||||..|.| ..:...::|.|||||:|.::.||.:..:..|||||||||
pombe   257 NSLIQGTNLKAVVVYGGAPKSEQAR-AAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADR 320

  Fly   440 MLDMGFEPQIRKIVSQIRPD------RQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANH 498
            |||.|||..||.|:|. .||      |||:.:|||||:.|:.||..||.:.::|.|||.||:|:.
pombe   321 MLDTGFEQDIRNIISH-TPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQ 384

  Fly   499 NIRQVVDVCDE-FSKEEKLKTLLSDIYDTSESPGKIIIFVETKR---RVDNLVRFIRSFGVRCGA 559
            ||.|:|::.|: .|||..|..||.....:.....||:|||..|:   ||:..:  .|.:.|  ..
pombe   385 NITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTL--ARKYNV--VG 445

  Fly   560 IHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRS 624
            ||||.||..|...|.:|:|||..:||||||||||||:..::.|||..:|...|||:||||||||:
pombe   446 IHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRA 510

  Fly   625 NTKGTSFAFFTKNNAKQAKALVDVLREANQEINPAL 660
            |||||:..|||..:...|..||:|||:|.|:|...|
pombe   511 NTKGTAITFFTPQDKSHAGELVNVLRQAKQDIPEGL 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rm62NP_524243.2 PTZ00424 280..656 CDD:185609 172/387 (44%)
DEADc 283..488 CDD:238167 88/212 (42%)
HELICc 499..633 CDD:238034 65/137 (47%)
dbp3NP_596388.1 PTZ00424 169..549 CDD:185609 173/390 (44%)
DEADc 169..374 CDD:238167 88/212 (42%)
HELICc 385..519 CDD:238034 65/137 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0331
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.770

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