DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rm62 and ddx-46

DIOPT Version :10

Sequence 1:NP_524243.2 Gene:Rm62 / 40739 FlyBaseID:FBgn0003261 Length:719 Species:Drosophila melanogaster
Sequence 2:NP_001033411.1 Gene:ddx-46 / 176943 WormBaseID:WBGene00018776 Length:970 Species:Caenorhabditis elegans


Alignment Length:464 Identity:193/464 - (41%)
Similarity:274/464 - (59%) Gaps:24/464 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   242 FKKNFYQEHPNVANRSPYEVQRYREE-QEITVRG-QVPNPIQDFSEVHLPDYVMKEIRRQGYKAP 304
            ||||||.|...:...:..||:.|||| ..|||:| ..|.||:.:::..:...:|..:::..|..|
 Worm   263 FKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMNVLKKFEYSKP 327

  Fly   305 TAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQ 369
            |:||||..|..|||.:.:|||||||||||.::||...||.:|..|:.||||||::||||||||.|
 Worm   328 TSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVILAPTRELAMQ 392

  Fly   370 IQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGS---TNLKRCTY 431
            ..:.|.:|.....::..|.:||.....|:.||:||.|||:.||||:||.|:|.|   |||:|.||
 Worm   393 TYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTY 457

  Fly   432 LVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSA 496
            |||||||||.|.||||||.|:|:.||||:||:::|||:|:.::.||...|...::|.:|...:..
 Worm   458 LVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVC 522

  Fly   497 NHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGA-I 560
            : :|.|...:|.|..|..||..||...|:    .|..|:||:.:.:.|::|..:...|....| :
 Worm   523 S-DITQNAVICAEHQKFLKLLELLGMYYE----EGSSIVFVDKQEKADDIVDQLMRTGYNSVAPL 582

  Fly   561 HGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSN 625
            ||...|.:||..:.:|::|...:||||.||||||||..:..|:|:|.|.:.|||:||:|||||:.
 Worm   583 HGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAG 647

  Fly   626 TKGTSFAF-FTKNNAKQAKALVDVLREANQEINPALENLARNSRYDGGGGRSRYGGGG-----GG 684
            .||.::.| ..::..|.|..:......|.  ..|..:..|...|:     :|.....|     ||
 Worm   648 RKGYAYTFVLPEHQEKMAGEICRAFETAG--CKPPADLKAMFERF-----KSEMAAEGKEVKLGG 705

  Fly   685 GRFGGGGFK 693
            ..|.|.|:|
 Worm   706 KGFEGSGYK 714

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rm62NP_524243.2 DEAD-like_helicase_N 231..669 CDD:475120 184/433 (42%)
ddx-46NP_001033411.1 DEADc_DDX46 293..513 CDD:350711 109/219 (50%)
SrmB 303..731 CDD:440279 174/424 (41%)
KH-I 875..970 CDD:469614
Blue background indicates that the domain is not in the aligned region.

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