DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rm62 and ddx43

DIOPT Version :10

Sequence 1:NP_524243.2 Gene:Rm62 / 40739 FlyBaseID:FBgn0003261 Length:719 Species:Drosophila melanogaster
Sequence 2:NP_001315122.1 Gene:ddx43 / 100136871 ZFINID:ZDB-GENE-080204-77 Length:719 Species:Danio rerio


Alignment Length:556 Identity:221/556 - (39%)
Similarity:320/556 - (57%) Gaps:76/556 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 GGFGDRRGGGGGGSQD---------------LPM-RPVDFSNLAP---------------FKKNF 246
            ||.|.|.|....|.|:               .|. .|:|:::|..               .||||
Zfish   170 GGSGYRNGNSSQGYQNNSCWSASAVKAAAAAAPAPTPIDWTSLRENRDKYEAMKWQDLPVLKKNF 234

  Fly   247 YQEHPNVANRSPYEVQRYREE-QEITV-------RGQVPNPIQDFSE--VHLPDYVMKEIRRQGY 301
            |.|..:||.||..||:.:|:| ..|.|       :..:|||:..|.|  .|.|. :|:.|.|.|:
Zfish   235 YIEAKSVAARSAEEVKIWRKENNNIFVDDLKDGDKRTIPNPVCTFEEAFAHYPG-IMENIVRVGF 298

  Fly   302 KAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQ-QPLQRGDGPIALVLAPTRE 365
            |.||.||:|.||:.::|.:.:|||:||:||||.|:||..:|::.| .|..:.:||..|||.||||
Zfish   299 KKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQPMPRDKRNGPGMLVLTPTRE 363

  Fly   366 LAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCT 430
            ||.||:....::....: ::.|::||..:..|::.:..|.:|||||||||.|.......||:..|
Zfish   364 LALQIEAECNKYSYKGF-KSICIYGGGDRNAQIKVVTSGVDIVIATPGRLNDLQMNELINLRSIT 427

  Fly   431 YLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELS 495
            |||||||||||||||||||.||:..|||||||:|.|||||..|::||:.:|.:.:.:.:|:|:|:
Zfish   428 YLVLDEADRMLDMGFEPQIMKIILDIRPDRQTVMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLA 492

  Fly   496 ANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAI 560
            |.:.::|.|    .|.:|::.|..:.|.....|...|::|||..|.:.|:|...:...|:...::
Zfish   493 AVNTVQQTV----LFVQEDEKKDYVFDFIHRMEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSL 553

  Fly   561 HGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSN 625
            |||:.|.:|:..|::|:.|:..||||||:|:|||||..|.:|.|:|:|:|.|:|:||:|||||:.
Zfish   554 HGDREQCDREEALQDFKDGRVRILVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAG 618

  Fly   626 TKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNSRYD---------------GGGGR 675
            ..|.|....|:.:.:.|..|:.:|..:.|::...|..:|  .||:               |||| 
Zfish   619 RSGESVTLVTREDWRVAAELITILERSGQDVPEELVLMA--ERYEKHRREKEMFGPRSGRGGGG- 680

  Fly   676 SRYGGGGGGGRFGGGGFKKGSLSNGRGFGGGGGGGG 711
               ||||.||.:||||       .|||.||||||||
Zfish   681 ---GGGGRGGGWGGGG-------GGRGGGGGGGGGG 706

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rm62NP_524243.2 DEAD-like_helicase_N 231..669 CDD:475120 186/464 (40%)
ddx43NP_001315122.1 KH-I_DDX43_DDX53 102..167 CDD:411858
SrmB 287..669 CDD:440279 163/389 (42%)
Blue background indicates that the domain is not in the aligned region.

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