DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG2017 and waw

DIOPT Version :9

Sequence 1:NP_649603.3 Gene:CG2017 / 40733 FlyBaseID:FBgn0037391 Length:643 Species:Drosophila melanogaster
Sequence 2:NP_001027089.1 Gene:waw / 3771960 FlyBaseID:FBgn0024182 Length:696 Species:Drosophila melanogaster


Alignment Length:433 Identity:85/433 - (19%)
Similarity:146/433 - (33%) Gaps:124/433 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 FEHLVTQMKW--------RLREGNGEAIYEIGVSDAGYLQGLSDKDMNASLTTLKQMAHSLGAST 185
            |.|.||:..|        |.|..|...|..|.:  ...||...||..:|.|         :..|.
  Fly     9 FHHTVTRRTWCAVTIFFCRQRNVNSAMIRAISI--RWLLQRPGDKRHSAWL---------VARSK 62

  Fly   186 SVLRRKTIAARRAVAEV-------LVRKIPDDQHNIEVRV---AVLGGADAGKSTLLGVLTQ--- 237
            |:|.|......:...|.       |:|:.   .|....|:   :::...|.|||||...|.:   
  Fly    63 SLLVRNLSTTNQVKGETEEPSQADLLREF---AHMPVERIRNFSIIAHVDHGKSTLADRLLELTG 124

  Fly   238 ---------DELDNGHGRARLNMFRHMHEIQSGRTSCISHETLGFDALGNVVNYKYNEMMTAEEI 293
                     ..|||      |.:.|........:|:.|.|...|                     
  Fly   125 AIARNGGQHQVLDN------LQVERERGITVKAQTASIFHRHKG--------------------- 162

  Fly   294 SDRSSKLVTFMDLAGHRRYMRTTVQALSGYSPHYAMLVVSAGSGCNDTTEEHLAIVRALDMPFFV 358
               ...|:..:|..||..:.....::|:....  .:|:|.|..|....|..:..:.:...:....
  Fly   163 ---QLYLLNLIDTPGHVDFSNEVSRSLAACDG--VVLLVDACHGVQAQTVANYHLAKQRQLAVVP 222

  Fly   359 LVTKTDI--TSPDATVQELCNLLTTIGCRKVPFVVTNTDEAISAGSNQISENIVPIFCVSNVTGT 421
            ::.|.||  .:||...|:|          |:.|.: :.||.:.               ||...||
  Fly   223 VLNKIDIKHANPDQVCQDL----------KLLFGI-DPDEVLR---------------VSAKLGT 261

  Fly   422 GLNLVTKFLYVLSPGISNAEKDRLEQESCEFQV-------DEIFRVSDVGPVVGGLLVQGVLTEN 479
            |::      .||...|......:::::| :|:.       |:.....::..|:.|.|.|....::
  Fly   262 GVS------EVLERVIETVPPPQVQRDS-DFRALIFDSWFDKYRGALNLIYVLNGKLEQNQDIQS 319

  Fly   480 MAMKIGPLPDGSFHPVTVNTIHRNKAPCRVVRAGQSASLSFSM 522
            :|.|      ..:...:::.:...:.|...|.|||...::.:|
  Fly   320 LATK------KVYSVKSISVLRPAECPVPDVSAGQVGLIACNM 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2017NP_649603.3 GTPBP1 100..635 CDD:227583 85/433 (20%)
GTPBP1_like 217..436 CDD:206728 45/235 (19%)
GTPBP_II 450..536 CDD:293895 14/80 (18%)
GTPBP_III 547..634 CDD:294007
wawNP_001027089.1 PRK05433 94..695 CDD:235462 61/334 (18%)
LepA 100..277 CDD:206677 45/240 (19%)
EF4_II 285..370 CDD:293900 14/78 (18%)
EF4_III 386..461 CDD:293917
lepA_C 502..581 CDD:239680
LepA_C 589..695 CDD:283959
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464645
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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