DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1213 and INT4

DIOPT Version :9

Sequence 1:NP_001246937.1 Gene:CG1213 / 40728 FlyBaseID:FBgn0037387 Length:491 Species:Drosophila melanogaster
Sequence 2:NP_001328028.1 Gene:INT4 / 827346 AraportID:AT4G16480 Length:582 Species:Arabidopsis thaliana


Alignment Length:554 Identity:140/554 - (25%)
Similarity:221/554 - (39%) Gaps:121/554 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 KSGRIFMAAVAANLSAFVVGTTLGWTSPIGPKLKSEDTSDSPLSRPITSDEDAWISSLI----AV 98
            |:..|...|::|.:...:.|...|..|  |..|..::..|.       .|:..|:.|.|    ..
plant    23 KTPYIMRLALSAGIGGLLFGYDTGVIS--GALLFIKEDFDE-------VDKKTWLQSTIVSMAVA 78

  Fly    99 GALVAPFVAGPMADRIGRKWVLLSSSLFFVLAFGLNMVASEVWILYMSRLIQGFGVGFVMTVQPM 163
            ||:|...|.|.:.|:.||:..:|.:.:.|::...:...|...|::.:.|:..|||||......|:
plant    79 GAIVGAAVGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMASMTSPL 143

  Fly   164 YVGEISTDNVRGATGSLMQLFIVGGILYVYAIGPYVSYQALQWCCIV----VPVVFDLVFYM-MP 223
            |:.|.|...:|||..|...|.|.||..:.|.|.....:....|..::    ||.:...|..: :|
plant   144 YISEASPARIRGALVSTNGLLITGGQFFSYLINLAFVHTPGTWRWMLGVAGVPAIVQFVLMLSLP 208

  Fly   224 ESPYFFAGKGRKSEALKSLQFLRGQSAEGVHDEMAEIQANVEEAMASKGTVMDLF----KNA-GN 283
            |||.:...|.|.:|:...|:  |...|:.|..||..::.:||...|.:..:.|.|    |.| ||
plant   209 ESPRWLYRKDRIAESRAILE--RIYPADEVEAEMEALKLSVEAEKADEAIIGDSFSAKLKGAFGN 271

  Fly   284 ---RRALFICAGLI--SFQQLSGINVVLFNSQSI-----FASANTGLDPAIATIIIGCVQVGSSA 338
               ||.|  .||:.  ..||..|||.|::.|.||     :||..|.:  |::.|..|...:| |.
plant   272 PVVRRGL--AAGITVQVAQQFVGINTVMYYSPSIVQFAGYASNKTAM--ALSLITSGLNALG-SI 331

  Fly   339 LTPLVADRLGRK--------------VMLLTSSSVMSIGLAALGAF------------FYMQLVK 377
            ::.:..||.||:              ::|.|..|..:|....:.||            .|..|..
plant   332 VSMMFVDRYGRRKLMIISMFGIIACLIILATVFSQAAIHAPKIDAFESRTFAPNATCSAYAPLAA 396

  Fly   378 GDISSVVW------------------------------------------------------MPV 388
            .:.....|                                                      :.:
plant   397 ENAPPSRWNCMKCLRSECGFCASGVQPYAPGACVVLSDDMKATCSSRGRTFFKDGCPSKFGFLAI 461

  Fly   389 PALIIYNIVYCTGFGPLPWAVLGEMFPANIKSVASSVVASTCWTLGFLVTFFYPSL-DALGSYYA 452
            ..|.:|.:||..|.|.:||.|..|::|...:.:...:.|.:.|....:|:..:.|| .||||...
plant   462 VFLGLYIVVYAPGMGTVPWIVNSEIYPLRYRGLGGGIAAVSNWVSNLIVSESFLSLTHALGSSGT 526

  Fly   453 FWLFAVCMVVAFFFVLFVVMETKGLSLQQIQDRL 486
            |.|||....:..||:..:|.|||||..::::..|
plant   527 FLLFAGFSTIGLFFIWLLVPETKGLQFEEVEKLL 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1213NP_001246937.1 SP 42..482 CDD:273317 138/544 (25%)
MFS 47..460 CDD:119392 128/517 (25%)
INT4NP_001328028.1 MFS_HMIT_like 33..547 CDD:340918 131/529 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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