DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1213 and hmit-1.2

DIOPT Version :9

Sequence 1:NP_001246937.1 Gene:CG1213 / 40728 FlyBaseID:FBgn0037387 Length:491 Species:Drosophila melanogaster
Sequence 2:NP_507624.1 Gene:hmit-1.2 / 180206 WormBaseID:WBGene00013074 Length:613 Species:Caenorhabditis elegans


Alignment Length:598 Identity:139/598 - (23%)
Similarity:237/598 - (39%) Gaps:153/598 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 FQIREGNTRTMSPEPVKSGR----IFMAAVAANLSAFVVGTTLGWTS------PIGPKLKSEDTS 76
            |::.|..    .|.|.|:.:    :::...||.:..|:.|......|      |..|.||...| 
 Worm     6 FKVSESG----RPRPEKNPKLGFFVYLLGSAAIIGGFLFGYDTSVVSAAMLYVPEAPGLKPMGT- 65

  Fly    77 DSPLSRPITSDEDAWISSLIAVG---ALVAPFVAGPMADRIGRKWVLLSSSLFFVLAFGLNMVAS 138
                         .|...::::.   |.|..:.:|..:||.|||.:::.|:|.||....:..||.
 Worm    66 -------------VWKEVIVSITPGMAAVGAWFSGAGSDRYGRKPIIIGSTLIFVCGAVICAVAW 117

  Fly   139 EVWILYMSRLIQGFGVGFVMTVQPMYVGEISTDNVRGATGSLMQLF---------IVGGILYVYA 194
            ...::.:.|:..|.|:||...|.|:|:||.|..:|||...|...:.         |:||:...:.
 Worm   118 TKIVMLIGRIFLGVGIGFASMVVPVYLGEASPTHVRGTLVSAFAMMISFGQVVANIMGGVFSYWE 182

  Fly   195 IGPYVSYQALQWCCIVVPVVFDLV-FYMMPESPYFFAGKGRKSEALKSLQFLRGQSAEGVHDEMA 258
              ||.....|.:....:|.:...| |..:||:|.:....|...:|.:.|:.:.|.:.|.:..|:|
 Worm   183 --PYTIGWRLMFAFAGIPALIQFVCFIFLPETPRWLYENGHTEQAEQVLEKIYGGNTEWIEYELA 245

  Fly   259 EI-------QANVEEAMASKGTVMDLFKNAGNRRALFICAGLISFQQLSGINVVLFNSQSIFASA 316
            ||       |..:||...|...:..:.|.....:|.||.:.|.:||||:|||.:|:.:..|..||
 Worm   246 EIKTYAEERQKQMEEEKKSGPVIWRILKTPHVLKACFIGSMLQAFQQLAGINTILYYTADIIRSA 310

  Fly   317 NTGLDPA-----IATIIIGCVQVGSSALTPL-VADRLGRKVMLLTSSSVMSIGLAALGAFFYM-- 373
              |::..     |:.|:..|..:|..|  |: ..::|||:.:.|.|.:.:.:.|..:|..|.:  
 Worm   311 --GIENYHTIIWISVILSICNLIGPFA--PMFFIEKLGRRKLFLFSCAGVVVSLVLIGVSFLLVG 371

  Fly   374 -----------QLVKG------------------------------------------------- 378
                       .|:.|                                                 
 Worm   372 NDSAPNFDRSAYLLAGNYQSNGEAESCLMLSNCDSCVTSEHCGFCEDSETRTGFCLPVDHNDVTL 436

  Fly   379 -------------------DISSVVW-----------MPVPALIIYNIVYCTGFGPLPWAVLGEM 413
                               :.:|.||           :|:..:.:|.:.:..||..|||.:..|.
 Worm   437 YSSTGLCTNGLDKSNSSFPNATSYVWQKHHCTTSYTILPIVMMGVYLLTFSCGFTSLPWVLNSEF 501

  Fly   414 FPANIKSVASSVVASTCWTLGFLVTFFYPSL-DALGSYYAFWLFAVCMVVAFFFVLFVVMETKGL 477
            :|...:|...|:...:.|....::...|.|| .|:..|.||||:|:..::||.|:.|:|.||.|.
 Worm   502 YPMWARSTCVSISTLSNWVFNLIIALTYLSLTHAITKYGAFWLYAIFTIIAFIFIYFLVPETTGY 566

  Fly   478 SLQQIQDRLNGKR 490
            |:.:::.....||
 Worm   567 SIDEVEMLFMNKR 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1213NP_001246937.1 SP 42..482 CDD:273317 132/564 (23%)
MFS 47..460 CDD:119392 123/537 (23%)
hmit-1.2NP_507624.1 MFS 32..562 CDD:421695 128/549 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D430696at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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