DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1213 and hmit-1.3

DIOPT Version :9

Sequence 1:NP_001246937.1 Gene:CG1213 / 40728 FlyBaseID:FBgn0037387 Length:491 Species:Drosophila melanogaster
Sequence 2:NP_497725.2 Gene:hmit-1.3 / 175458 WormBaseID:WBGene00010811 Length:604 Species:Caenorhabditis elegans


Alignment Length:578 Identity:146/578 - (25%)
Similarity:236/578 - (40%) Gaps:144/578 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 GNTRTMSPEPVKSGRIFMAAVAANLSAFVVGTTLGWTS------PIGPKLKSEDTSDSPLSRPIT 85
            |.||. |.:|.....::|.|.:|.:..|:.|...|..|      |....:|       ||     
 Worm    14 GQTRP-SSDPKTGWFVYMLAFSAVIGGFLFGYDTGIVSAAMLYVPNASGIK-------PL----- 65

  Fly    86 SDEDAWISSLIAVG---ALVAPFVAGPMADRIGRKWVLLSSSLFFVLAFGLNMVASEVW---ILY 144
              :..|...::::.   |.:....:||.:|.:|||.:::.:|:.|.:.   .::.:..|   ||.
 Worm    66 --DSVWQEIIVSITPGVAAIGSLCSGPGSDFLGRKKIIIGASVTFTIG---AIICAAAWTKIILL 125

  Fly   145 MSRLIQGFGVGFVMTVQPMYVGEISTDNVRGATGSLMQLFIVGGILYVYAIGPYVSY-------Q 202
            :.|::.|..:||...:.|:||.|.|..::||...:..||.|..|::....||...||       .
 Worm   126 IGRILLGLAIGFASMIVPIYVSEASPSHIRGKLVTGFQLMITVGLVIANIIGGAFSYVDPDQVGW 190

  Fly   203 ALQWCCIVVPVVFDLV-FYMMPESPYFFAGKGRKSEALKSLQFLRGQSAEGVHDEMAEIQANVEE 266
            .|.:....||.:...| |..:||||.:....||..||.:.|..:.....|.|..|:.||..:.||
 Worm   191 RLMFAFAAVPAIIQFVCFLFLPESPRWLYEHGRTVEAREVLTRIYNGHTEWVDYEINEISFSYEE 255

  Fly   267 AMASKG-------TVMDLFKNAGNRRALFICAGLISFQQLSGINVVLFNSQSIFASANTGLDPAI 324
            .:.:|.       |::.:.|....|:|:.|.:.|..||||||||.|::.:.:|..||  |:....
 Worm   256 ELRAKAEHAGNGPTIIRILKTPHVRKAMIIGSLLQMFQQLSGINTVMYYTGNIIRSA--GVKDNH 318

  Fly   325 ATIIIGCVQVGSSALTPL-------VADRLGRKVMLLTSSSVMSIGLAALGAFF----------- 371
            .||   .:.||:||:..|       :.:|:||:|:||.|...:.:.|.|:|..|           
 Worm   319 TTI---WISVGTSAINFLGTFIPIALVERVGRRVLLLVSMIGVILFLIAMGVSFLLINNDSLRTF 380

  Fly   372 --------YMQLVK-------------------------------------GDISS--------- 382
                    |...||                                     .|.||         
 Worm   381 DQQNYTLNYNPSVKHAAKCLKYSNCDFCVTDENCGFCESKVAKKGYCLPFPSDDSSDYSATGICE 445

  Fly   383 ----------VVW-----------MPVPALIIYNIVYCTGFGPLPWAVLGEMFPANIKSVASSVV 426
                      ..|           :|:..::.|.:.:..|:.||||.:..|.:|...:|.|.||.
 Worm   446 FSNLTNNGTDFEWEDTYCHTKFTVLPIIIMVFYLLSFSAGYAPLPWVLNAEFYPLWARSTAVSVS 510

  Fly   427 ASTCWTLGFLVTFFYPSL-DALGSYYAFWLFAVCMVVAFFFVLFVVMETKGLSLQQIQ 483
            .:..|....:|:..:.|| .|...|..|:::..|.:||..||.|.|.||||.|:.:::
 Worm   511 TACNWIFNLIVSLTFLSLSQAATKYGTFFIYCGCTMVALVFVFFFVPETKGYSIDEVE 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1213NP_001246937.1 SP 42..482 CDD:273317 141/560 (25%)
MFS 47..460 CDD:119392 127/533 (24%)
hmit-1.3NP_497725.2 MFS 34..558 CDD:421695 134/545 (25%)
MFS <190..>249 CDD:421695 17/58 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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