DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1208 and SNF3

DIOPT Version :9

Sequence 1:NP_001097692.1 Gene:CG1208 / 40727 FlyBaseID:FBgn0037386 Length:502 Species:Drosophila melanogaster
Sequence 2:NP_010087.1 Gene:SNF3 / 851333 SGDID:S000002353 Length:884 Species:Saccharomyces cerevisiae


Alignment Length:538 Identity:135/538 - (25%)
Similarity:234/538 - (43%) Gaps:98/538 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 TVSQEDGDSRNPIT------YDLLQENQSKTSKTRQYVAAMI-ICLGA-VAAGTALSWTSPVFPQ 72
            ::.:::.|.::.:|      ...:.:|....|:..|..:.|: ||:|. ||.|..|         
Yeast    55 SLQRQNSDRQSNMTSVFTDDISTIDDNSILFSEPPQKQSMMMSICVGVFVAVGGFL--------- 110

  Fly    73 ISAGNESSFNSTTGGISNSTSNE--------NDIRLTDSQKTLVGSMLPFGALFGALPSGYIADR 129
                    |...||.|::.||..        |....|..|.:::.|.|..|..||||.:.:|:|.
Yeast   111 --------FGYDTGLINSITSMNYVKSHVAPNHDSFTAQQMSILVSFLSLGTFFGALTAPFISDS 167

  Fly   130 IGRRYTAMVMDIPFILAWITLSFANS-------VGWLYLGRFLIGIATGSFCVVAPMYISEIAET 187
            .||:.|.:...| ||     .|..||       :..|.:||.:.||..|:...|.|:|.:|....
Yeast   168 YGRKPTIIFSTI-FI-----FSIGNSLQVGAGGITLLIVGRVISGIGIGAISAVVPLYQAEATHK 226

  Fly   188 SIRGSLGTLFQLLLTIGILFIYVVGALVSWKTLS---LLCLIIPI--------LLLVGLFIVPET 241
            |:||::.:.:|..:|.|:|    |.:.||..|.:   .....|||        .|.:|:|.:||:
Yeast   227 SLRGAIISTYQWAITWGLL----VSSAVSQGTHARNDASSYRIPIGLQYVWSSFLAIGMFFLPES 287

  Fly   242 PVYLLKNGKRSEANRALKWLWGDYCNTSNAIQAIQN-----DLDQTGVDASVKDLFSNRASRN-- 299
            |.|.:...|..||.::|.:|.|...:.|..::.:..     |.:.:...::..|.|.:..||.  
Yeast   288 PRYYVLKDKLDEAAKSLSFLRGVPVHDSGLLEELVEIKATYDYEASFGSSNFIDCFISSKSRPKQ 352

  Fly   300 --GMVISVLLMVFQQFSGINAVIFFMNEIFESSSTLNPNVCTIVVGVVQVIMTLASSLLIEKAGR 362
              .|...:.|..||||||||.:.::....|..:...|..:.:.:...|.|:..:.....:|..||
Yeast   353 TLRMFTGIALQAFQQFSGINFIFYYGVNFFNKTGVSNSYLVSFITYAVNVVFNVPGLFFVEFFGR 417

  Fly   363 KILLIFSSTIMTVC---LAMLG-AYNTINRHTDLSQSIGWLPLLCIVLFIVSFSVGYGPIPWMMM 423
            :.:|:....|||:.   :|::| :..|:        :...:.:..|.|||.:||..:|.:.|::.
Yeast   418 RKVLVVGGVIMTIANFIVAIVGCSLKTV--------AAAKVMIAFICLFIAAFSATWGGVVWVIS 474

  Fly   424 GELFMPDVKGIAVSLSVMMNW----VCVSLVTWLFGVLNAG------GADVPF-WFFSAWMGVAT 477
            .||:...|:....::....||    :|..:..:   :::.|      ||.:.| |.....|||..
Yeast   475 AELYPLGVRSKCTAICAAANWLVNFICALITPY---IVDTGSHTSSLGAKIFFIWGSLNAMGVIV 536

  Fly   478 AYVAIALQETKGKSASQI 495
            .|:.:  .||||.:..:|
Yeast   537 VYLTV--YETKGLTLEEI 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1208NP_001097692.1 MFS 96..482 CDD:119392 111/427 (26%)
MFS_1 96..443 CDD:284993 99/377 (26%)
SNF3NP_010087.1 MFS_HXT 99..556 CDD:340914 128/494 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157342621
Domainoid 1 1.000 165 1.000 Domainoid score I819
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm13432
orthoMCL 1 0.900 - - OOG6_100060
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.640

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