DRSC/TRiP Functional Genomics Resources

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Protein Alignment dgrn and Brca1

DIOPT Version :10

Sequence 1:NP_649596.1 Gene:dgrn / 40725 FlyBaseID:FBgn0037384 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_036646.2 Gene:Brca1 / 497672 RGDID:2218 Length:1817 Species:Rattus norvegicus


Alignment Length:55 Identity:20/55 - (36%)
Similarity:37/55 - (67%) Gaps:5/55 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   261 EELYKCPICMDSVSKREPVSTKCGHVFCRECIETAI---RATHKCPICNKKLTAR 312
            :::.:||||::.:  :|||||||.|:||:.|:...:   :...:||:|..::|.|
  Rat    19 QKILECPICLELI--KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNEITKR 71

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dgrnNP_649596.1 PEX10 <182..308 CDD:227861 18/49 (37%)
RING_Ubox 264..315 CDD:473075 20/52 (38%)
Brca1NP_036646.2 RING-HC_BRCA1 6..98 CDD:438161 20/55 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 305..346
BRCT_assoc 343..504 CDD:463719
Nuclear localization signal. /evidence=ECO:0000255 497..503
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 640..720
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 735..768
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 874..907
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 959..982
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1146..1185
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1259..1290
Interaction with PALB2. /evidence=ECO:0000250 1354..1381
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1375..1486
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1498..1534
BRCT_BRCA1_rpt1 1596..1692 CDD:349367
BRCT_BRCA1_rpt2 1703..1800 CDD:349353
Blue background indicates that the domain is not in the aligned region.

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