DRSC/TRiP Functional Genomics Resources

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Protein Alignment dgrn and Trim80

DIOPT Version :10

Sequence 1:NP_649596.1 Gene:dgrn / 40725 FlyBaseID:FBgn0037384 Length:319 Species:Drosophila melanogaster
Sequence 2:XP_038943725.1 Gene:Trim80 / 287824 RGDID:1311352 Length:643 Species:Rattus norvegicus


Alignment Length:156 Identity:40/156 - (25%)
Similarity:59/156 - (37%) Gaps:54/156 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 RRIRRRTSPVE-------VIDLSHLDRAPPVRSARNRDPDAFIDLCTPEGPRSRTVNLHSNDSLT 227
            |.:|||.|||.       |||:..:.     |..:::.|.   :|.|.....|..:.:.||.|..
  Rat    26 RTVRRRRSPVHRAAKYLAVIDMQKIS-----RPTQDKSPS---ELSTQSSRTSLQLLMSSNSSQH 82

  Fly   228 ILPRRSAENDPVVDLDVASPPKRVNRDIDESQKEELYKCPICMDSVSKREPVSTKCGHVFCRECI 292
            :|                               |:...||||:|..  |.||:|.|||.||..|:
  Rat    83 LL-------------------------------EDQVLCPICLDVF--RNPVTTACGHNFCMTCL 114

  Fly   293 ET------AIRATHKCPICNKKLTAR 312
            ::      ....|:.||.|.:...:|
  Rat   115 QSFWDHQADTGETYYCPQCREAFPSR 140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dgrnNP_649596.1 PEX10 <182..308 CDD:227861 31/131 (24%)
RING_Ubox 264..315 CDD:473075 20/55 (36%)
Trim80XP_038943725.1 RING_Ubox 84..153 CDD:473075 22/90 (24%)
Bbox1_TRIM8-like 177..221 CDD:380860
Bbox2_TRIM16-like 228..273 CDD:380827
SPRY 464..639 CDD:470632
Blue background indicates that the domain is not in the aligned region.

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