DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PSMG1 and Psmg1

DIOPT Version :10

Sequence 1:NP_649590.1 Gene:PSMG1 / 40719 FlyBaseID:FBgn0037378 Length:235 Species:Drosophila melanogaster
Sequence 2:NP_001386166.1 Gene:Psmg1 / 288236 RGDID:1305454 Length:289 Species:Rattus norvegicus


Alignment Length:277 Identity:61/277 - (22%)
Similarity:105/277 - (37%) Gaps:53/277 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSCPGFGELNIPSSRAFWDDCDEDELENLKPVE---------------KLQLKFDDDCDGEAAPV 50
            |:...|||:.....||..::.:|:|.::.:...               ||..:..:.| .||..:
  Rat     1 MAATFFGEVVKGPCRAGTEEEEEEEEQSRRDTPEDREVRRKLARKREVKLLRRQTETC-LEAVLL 64

  Fly    51 E----SEMLVVIEGVNVTHFASSLLEKDA--KRV-CAIPAN-----NSTLHWSHSSK-------- 95
            |    |:.::.: |.|.|.|.||.:....  :.| ||...|     ..|:|.|.:..        
  Rat    65 EKHPCSKFILAV-GSNATAFLSSFVMNSGVWEEVGCAKLWNEWCRTTDTVHLSPTDVFCVFYQLK 128

  Fly    96 --------QLLAIINEDLTSSGEVAELLLPY-VKLAKKVITLTLKPKVEFKSEDIQLYRDHIAVV 151
                    |....|.||  ...:..|.:..: .:...:|..||.:...|:|:.: ..|......:
  Rat   129 SDPSVLLCQCSCYIAED--QQFQWLEKVFGFRPRKNMQVTVLTCRHITEYKTCE-STYNLSSPFL 190

  Fly   152 RGIGANQ-KDITE---LEAPNFIAGVAAGVASWRDQMELPVTSFVIYTDKLPLDATAAQPVIKVL 212
            |.:...: ||...   ||.||.:.|::|.|.|:....::|...:|.|||.:.||....:....:.
  Rat   191 RALKTQKFKDTVYCPLLEQPNIVHGLSAAVLSYCQVWKVPAVLYVCYTDVMKLDLVTVEAFKPIF 255

  Fly   213 KAAGVACSSSYIPPRKE 229
            .:..:.|....||...|
  Rat   256 SSRSLKCLVKNIPESTE 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PSMG1NP_649590.1 None
Psmg1NP_001386166.1 PAC1 2..289 CDD:465018 60/276 (22%)

Return to query results.
Submit another query.