Protein Alignment kat-60L1 and nmd

DIOPT Version :10

• Sequence 1: NP_001163523.1
• Gene: kat-60L1 / 40715
• FlyBaseID: FBgn0037375
• Length: 673
• Species: Drosophila melanogaster
• Sequence 2: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Alignment Length: 301
• Identity: 113/301 - (37%)
• Similarity: 168/301 - (55%)
• Gaps: 23/301 - (7%)

  Fly   361 KTKAKHFSPLGYEV----HLVDTLEKDILQRHPCIKWTDVAGLNEAKTILQEAVVLPVIMPEFFK 421
            |.:.:.||  .||:    |||  :..||     .:.|.|:|||:.....|:|:||||:...:.||
  Fly    69 KLRGQEFS--DYELMIASHLV--VPADI-----TVSWADIAGLDSVIQELRESVVLPIQHKDLFK 124

  Fly   422 GIRRPW---RGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMAR 483
            . .:.|   :|||:.||||.|||::|||.|.|.|..|.|:..:.||.|:.|||:||...:|.:|.
  Fly   125 H-SKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLAS 188

  Fly   484 FYAPSTIFIDEIDALCASRGSDSEHEASRRFKAELLIQMDGLNASMQEEKVIMVLAATNHPWDID 548
            ...|..|||||||:...||.. ::|||:...|.:.::..|||  |......::|:.|||.|.|:|
  Fly   189 RIEPCIIFIDEIDSFLRSRNM-NDHEATAMMKTQFMMLWDGL--STNANSTVIVMGATNRPQDLD 250

  Fly   549 EAFRRRFEKRIYIPLPNEGTRSALLKLCLKDVCLSPSLNTGIIGDELQGYSGSDISNVCRDASMM 613
            :|..||...:.:|.||:|..|..:|||.|:...:|..::...:.....|:||||:..:||:||:.
  Fly   251 KAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVY 315

  Fly   614 AMRRLISGRTPDQIKQIRREEVDQPITLQDFQDARLRTKKS 654
            .||:||:.|.| ....:.|..|  .||:.|...:.|:.|:|
  Fly   316 RMRQLITSRDP-SATALDRNNV--RITMDDLLGSHLKIKES 353

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
kat-60L1	NP_001163523.1	P-loop containing Nucleoside Triphosphate Hydrolases	395..561	CDD:476819	69/168 (41%)
		AAA_lid_3	591..629	CDD:465537	15/37 (41%)
		Vps4_C	<638..671	CDD:462762	6/17 (35%)
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	69/168 (41%)
		AAA_lid_3	287..323	CDD:465537	13/35 (37%)