DRSC/TRiP Functional Genomics Resources

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Protein Alignment kat-60L1 and Vps4b

DIOPT Version :10

Sequence 1:NP_001163523.1 Gene:kat-60L1 / 40715 FlyBaseID:FBgn0037375 Length:673 Species:Drosophila melanogaster
Sequence 2:NP_001020887.1 Gene:Vps4b / 360834 RGDID:1305969 Length:444 Species:Rattus norvegicus


Alignment Length:419 Identity:160/419 - (38%)
Similarity:222/419 - (52%) Gaps:78/419 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   295 KSRSVERL-RARKLSTNTQLNLK--HKPVKKNS---LDENSNSDDQDATTSLEDNSHAQSLATSH 353
            :::..|.| ||.||....:...|  .||:|:..   :||..|..|.:|.:.              
  Rat    59 RAKCTEYLDRAEKLKEYLKKKEKKPQKPMKEEQSGPVDEKGNDSDGEAESD-------------- 109

  Fly   354 NTPKCSPKTKAKHFSPLGYEVHLVDTLEKDILQRHPCIKWTDVAGLNEAKTILQEAVVLPVIMPE 418
                 .|:.|           .|.:.|:..|:...|.:||:|||||..||..|:|||:||:..|.
  Rat   110 -----DPEKK-----------KLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPH 158

  Fly   419 FFKGIRRPWRGVLMVGPPGTGKTMLAKAVATEC-GTTFFNVSSSTLTSKYRGESEKLVRLLFEMA 482
            .|.|.|.||||:|:.|||||||:.||||||||. .:|||::|||.|.||:.|||||||:.||::|
  Rat   159 LFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLA 223

  Fly   483 RFYAPSTIFIDEIDALCASRGSDSEHEASRRFKAELLIQMDGLNASMQEEKVIMVLAATNHPWDI 547
            |...||.|||||||:||.|| |::|.||:||.|.|.|:||.|:..   :...|:||.|||.||.:
  Rat   224 RENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVGV---DNDGILVLGATNIPWVL 284

  Fly   548 DEAFRRRFEKRIYIPLPNEGTRSALLKLCLKDVCLSPSLNTG---IIGDELQGYSGSDISNVCRD 609
            |.|.|||||||||||||....|:|:.:|.|...  ..||...   .:|.:..||||:|||.:.||
  Rat   285 DSAIRRRFEKRIYIPLPEAHARAAMFRLHLGST--QNSLTEADFQELGRKTDGYSGADISIIVRD 347

  Fly   610 ASMMAMRR------------------------LISGRTPDQIKQIRREEVDQP--------ITLQ 642
            |.|..:|:                        |::..:|.....|....:|.|        :::.
  Rat   348 ALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMW 412

  Fly   643 DFQDARLRTKKSVSADDVARFEKWMEEYG 671
            |...:...||.:|:..|:.:.:|:.|::|
  Rat   413 DMLRSLSSTKPTVNEQDLLKLKKFTEDFG 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kat-60L1NP_001163523.1 P-loop containing Nucleoside Triphosphate Hydrolases 395..561 CDD:476819 100/166 (60%)
AAA_lid_3 591..629 CDD:465537 15/61 (25%)
Vps4_C <638..671 CDD:462762 8/40 (20%)
Vps4bNP_001020887.1 MIT_VPS4 7..69 CDD:239141 2/9 (22%)
RecA-like_VPS4 128..298 CDD:410929 103/173 (60%)
AAA_lid_3 325..366 CDD:465537 13/40 (33%)
Vps4_C 381..441 CDD:462762 11/59 (19%)

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