DRSC/TRiP Functional Genomics Resources

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Protein Alignment Madm and Nrbp1

DIOPT Version :9

Sequence 1:NP_001303420.1 Gene:Madm / 40710 FlyBaseID:FBgn0027497 Length:637 Species:Drosophila melanogaster
Sequence 2:XP_017449829.1 Gene:Nrbp1 / 619579 RGDID:1589575 Length:543 Species:Rattus norvegicus


Alignment Length:576 Identity:281/576 - (48%)
Similarity:370/576 - (64%) Gaps:63/576 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSNSQANAGISGSTVADEPIQHHPSLAAGPVSASCPAATPPSQSTQQPPPHIVSASTADAGSSAA 65
            ||..::...:|..:   :|.....|.|.|..|.|     ||..||                :|||
  Rat     1 MSEGESQTVVSSGS---DPKVESSSSAPGLTSVS-----PPVTST----------------TSAA 41

  Fly    66 VGVGVVAGSEGVNLDSSPRESGDDSEDESEILEESPCGRWLKRREEVDQRDVPGIDCVHLAMDTE 130
                            ||.|. ::||||||||||||||||.||||||:||:|||||..:||||||
  Rat    42 ----------------SPEEE-EESEDESEILEESPCGRWQKRREEVNQRNVPGIDSAYLAMDTE 89

  Fly   131 EGVEVVWNEVQYASLQELKSQEEKMRQVFDNLLQLDHQNIVKFHRYWTDTQQAERPRVVFITEYM 195
            |||||||||||::..:..|.||||:|.|||||:||:|.||||||:||.|.:: .:.||:||||||
  Rat    90 EGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFHKYWADVKE-NKARVIFITEYM 153

  Fly   196 SSGSLKQFLKRTKRNAKRLPLESWRRWCTQILSALSYLHSCSPPIIHGNLTCDSIFIQHNGLVKI 260
            ||||||||||:||:|.|.:..::|:||||||||||||||||.|||||||||||:||||||||:||
  Rat   154 SSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKI 218

  Fly   261 GS--------VVPDAVHYSVRRGRERERERERGAHYFQAPEYGAADQLTAALDIYAFGMCALEMA 317
            ||        |.||.::..|:..    ||.::..|:| |||||....:|.|:|||:|||||||||
  Rat   219 GSVFHRIFANVAPDTINNHVKTC----REEQKNLHFF-APEYGEVTNVTTAVDIYSFGMCALEMA 278

  Fly   318 ALEIQPSNSESTAINEETIQRTIFSLENDLQRDLIRKCLNPQPQDRPSANDLLFHPLLFEVHSLK 382
            .|||| .|.||:.:.:|.|...|..||:.|||:.|:|||..:|..||:|.:|||||.||||.|||
  Rat   279 VLEIQ-GNGESSYVPQEAISSAIQLLEDSLQREFIQKCLQSEPARRPTARELLFHPALFEVPSLK 342

  Fly   383 LLTAHCLVFSPANRTMFSETAFDGLMQRYYQPDVVMAQLRLAGGQERQYRLADVSGADKLEKFVE 447
            ||.|||:|   .::.|..|.|.:.:.:. .....|:|::....|:|....|...|.|.:|:||:|
  Rat   343 LLAAHCIV---GHQHMIPENALEEITKN-MDTSAVLAEIPAGPGREPVQTLYSQSPALELDKFLE 403

  Fly   448 DVKYGVYPLITYSGKKP--PNFRSRAASPERADSVKSATPEPVDTESRRIVNMMCSVKIKEDSND 510
            ||:.|:|||..:...:|  |. :....||....|||:.||||.:.|:|::|.|.|:::..|:...
  Rat   404 DVRNGIYPLTAFGLPRPQQPQ-QEEVTSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVK 467

  Fly   511 ITMTILLRMDDKMNRQLTCQVNENDTAADLTSELVRLGFVHLDDQDKIQVLLEETL 566
            ..:|:||:::||:||.|:|.:..|:...||.:|||:|||:...||.::..||||||
  Rat   468 HHLTLLLKLEDKLNRHLSCDLMPNENIPDLAAELVQLGFISEADQSRLTSLLEETL 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MadmNP_001303420.1 PK_NRBP1_like 114..376 CDD:270886 164/269 (61%)
S_TKc 123..375 CDD:214567 157/259 (61%)
Nrbp1XP_017449829.1 PK_NRBP1 60..342 CDD:270936 180/288 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335059
Domainoid 1 1.000 277 1.000 Domainoid score I1655
eggNOG 1 0.900 - - E1_KOG1266
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H8373
Inparanoid 1 1.050 516 1.000 Inparanoid score I1243
OMA 1 1.010 - - QHG48610
OrthoDB 1 1.010 - - D233882at33208
OrthoFinder 1 1.000 - - FOG0002915
OrthoInspector 1 1.000 - - otm44849
orthoMCL 1 0.900 - - OOG6_107807
Panther 1 1.100 - - LDO PTHR13902
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X143
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1413.810

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