DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Madm and nrbp1

DIOPT Version :9

Sequence 1:NP_001303420.1 Gene:Madm / 40710 FlyBaseID:FBgn0027497 Length:637 Species:Drosophila melanogaster
Sequence 2:NP_001005659.1 Gene:nrbp1 / 448149 XenbaseID:XB-GENE-5916003 Length:526 Species:Xenopus tropicalis


Alignment Length:562 Identity:273/562 - (48%)
Similarity:363/562 - (64%) Gaps:58/562 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SQANAGISGSTVADEPIQHHPSLAAGPVSASCPAATPPSQSTQQPPPHIVSASTADAGSSAAVGV 68
            |:.....:.||.:|      |.:.:| ||.|.|.:.||:      ||.                 
 Frog     2 SEGEGKTAPSTGSD------PKMESG-VSMSPPVSAPPA------PPQ----------------- 36

  Fly    69 GVVAGSEGVNLDSSPRESGDDSEDESEILEESPCGRWLKRREEVDQRDVPGIDCVHLAMDTEEGV 133
                           .|..::||||||||||||||||.||||||:||:|||||..:|||||||||
 Frog    37 ---------------EEEEEESEDESEILEESPCGRWQKRREEVNQRNVPGIDSAYLAMDTEEGV 86

  Fly   134 EVVWNEVQYASLQELKSQEEKMRQVFDNLLQLDHQNIVKFHRYWTDTQQAERPRVVFITEYMSSG 198
            ||||||||::..:..|.||||::.|||||:||:|.||||||:||.|.:: .|.||:|||||||||
 Frog    87 EVVWNEVQFSERKNFKMQEEKVKAVFDNLIQLEHLNIVKFHKYWADVKE-NRARVIFITEYMSSG 150

  Fly   199 SLKQFLKRTKRNAKRLPLESWRRWCTQILSALSYLHSCSPPIIHGNLTCDSIFIQHNGLVKIGSV 263
            |||||||:||:|.|.:..::|:||||||||||||||||.|||||||||||:||||||||:|||||
 Frog   151 SLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSV 215

  Fly   264 VPDAVHYSVRRGRERERERERGAHYFQAPEYGAADQLTAALDIYAFGMCALEMAALEIQPSNSES 328
            .||.::..|:..    ||.::..|:| |||||....:|.|:|||:|||||||||.|||| .|.||
 Frog   216 APDTINNHVKTC----REEQKNLHFF-APEYGEVTNVTTAVDIYSFGMCALEMAVLEIQ-GNGES 274

  Fly   329 TAINEETIQRTIFSLENDLQRDLIRKCLNPQPQDRPSANDLLFHPLLFEVHSLKLLTAHCLVFSP 393
            :.:.:|.|...|..||:.|||:.|:|||...|..||:|.:|||||.||||.|||||.|||:|   
 Frog   275 SYVPQEAINNAIQFLEDPLQREFIQKCLETDPSKRPTARELLFHPALFEVPSLKLLAAHCIV--- 336

  Fly   394 ANRTMFSETAFDGLMQRYYQPDVVMAQLRLAGGQERQYRLADVSGADKLEKFVEDVKYGVYPLIT 458
            .::.|..|.|.:. |.:......|:|::..| .:|....:...|.|.:|:||:|||:.|:|||..
 Frog   337 GHQHMIPENALEE-MTKNLDMSAVLAEISHA-DREGVRMIFSQSPALELDKFLEDVRNGIYPLTA 399

  Fly   459 YSGKKPPNFRSRAA-SPERADSVKSATPEPVDTESRRIVNMMCSVKIKEDSNDITMTILLRMDDK 522
            :...:|...:.... ||....|||:.||||.:.|:|::|.|.|:::..::.....:|:||:::||
 Frog   400 FGVPRPQQPQQEVVKSPVVPPSVKTPTPEPAEVETRKVVQMQCNIESVDEGAKHHLTLLLKLEDK 464

  Fly   523 MNRQLTCQVNENDTAADLTSELVRLGFVHLDDQDKIQVLLEE 564
            :||.|:|.:..|:...:|.:|||:||||...||.::..||||
 Frog   465 LNRHLSCDLLPNENIQELAAELVQLGFVSESDQIRLACLLEE 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MadmNP_001303420.1 PK_NRBP1_like 114..376 CDD:270886 164/261 (63%)
S_TKc 123..375 CDD:214567 157/251 (63%)
nrbp1NP_001005659.1 PK_NRBP1 52..328 CDD:270936 182/282 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 277 1.000 Domainoid score I1695
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H8373
Inparanoid 1 1.050 475 1.000 Inparanoid score I1453
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D233882at33208
OrthoFinder 1 1.000 - - FOG0002915
OrthoInspector 1 1.000 - - oto102876
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X143
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.060

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