DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1236 and grhpra

DIOPT Version :9

Sequence 1:NP_649579.2 Gene:CG1236 / 40708 FlyBaseID:FBgn0037370 Length:347 Species:Drosophila melanogaster
Sequence 2:NP_001018361.1 Gene:grhpra / 497183 ZFINID:ZDB-GENE-040724-230 Length:327 Species:Danio rerio


Alignment Length:322 Identity:175/322 - (54%)
Similarity:236/322 - (73%) Gaps:4/322 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 KVYVTRPDVDDSGLELLRKS--CQVSTWHETNPVPRSELIRVVAGKDALYCALTDKVDKEVLDAA 90
            ||:||| .:...|:::|:|:  |.:|.|....||||:||::.|||...|.|.|:||:|.||||||
Zfish     8 KVFVTR-RIPQEGMKILQKASMCDLSLWDSDEPVPRAELLKGVAGAHGLICLLSDKIDTEVLDAA 71

  Fly    91 GPQLKCVATISVGYDHIDVEECRKRGIRVGFTPDVLTDATAELTLALLLATNRRLFEANKQVYNG 155
            ||.||.::|:|||:||:.::|.:|||||||:|||||||||||||:||||||.|||.|..::|.||
Zfish    72 GPNLKVISTLSVGFDHLAIDEIKKRGIRVGYTPDVLTDATAELTVALLLATARRLPEGVEEVKNG 136

  Fly   156 GWKSWAPMWMCGQGLKGSRVGLLGFGRIGQEIAARIVPFKPTEITYTTRSLRPKEAAAVNARHVD 220
            ||.:|.|:|:||.||.||.||::|.||||..||.|:.||...::.||.|..:| ||..|:..:|.
Zfish   137 GWSTWKPLWLCGYGLSGSTVGVIGLGRIGLAIARRLKPFGVKKLLYTGRKPKP-EAEEVDGEYVP 200

  Fly   221 FDEMLRESDLIVVCCALTPETKEIFNATAFQKMKPNCILINTARGGVVDQKALYEALKTKRILAA 285
            .|.::||||.:||.|:|||:|:.:.:.|.|.|||...:.|||:||.||:|:.|:|||.:.:|.||
Zfish   201 LDTLVRESDFVVVSCSLTPDTQGLCDKTFFGKMKKTSVFINTSRGAVVNQEDLFEALSSGQIAAA 265

  Fly   286 GLDVTTPEPLPIDDPLLKLDNVVILPHIGSADIETRKEMSRITARNILAALAGDKMVAEVEL 347
            |||||:|||||.:.|||.|.|.|:|||||||...||..||.:||.|:||.|.|.:|.:|:::
Zfish   266 GLDVTSPEPLPTNHPLLTLKNCVVLPHIGSATYSTRGVMSELTANNLLAGLTGSEMPSELKM 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1236NP_649579.2 GDH 27..338 CDD:240626 172/311 (55%)
LdhA 27..338 CDD:223980 172/311 (55%)
grhpraNP_001018361.1 LdhA 8..326 CDD:223980 175/319 (55%)
GDH 8..318 CDD:240626 172/311 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574187
Domainoid 1 1.000 343 1.000 Domainoid score I1040
eggNOG 1 0.900 - - E1_COG1052
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H49088
Inparanoid 1 1.050 349 1.000 Inparanoid score I2260
OMA 1 1.010 - - QHG53501
OrthoDB 1 1.010 - - D1378766at2759
OrthoFinder 1 1.000 - - FOG0000836
OrthoInspector 1 1.000 - - otm26587
orthoMCL 1 0.900 - - OOG6_100397
Panther 1 1.100 - - LDO PTHR10996
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1846
SonicParanoid 1 1.000 - - X646
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

Return to query results.
Submit another query.