DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2100 and trnt1

DIOPT Version :9

Sequence 1:NP_001163512.1 Gene:CG2100 / 40707 FlyBaseID:FBgn0037369 Length:477 Species:Drosophila melanogaster
Sequence 2:XP_005166087.1 Gene:trnt1 / 415249 ZFINID:ZDB-GENE-040625-176 Length:431 Species:Danio rerio


Alignment Length:415 Identity:194/415 - (46%)
Similarity:274/415 - (66%) Gaps:37/415 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 KVATPEFKSIFTPELNDLVALFKKYDYELRIAGGAVRDILMGIPPKDIDLATTATPDQMKQMFEK 126
            ::.|.||:|:||..|..|..:|:|..:|||||||||||:|.|..|:|:|.||||||::||.||:.
Zfish    28 QLKTKEFESLFTDGLVGLAEIFQKNQFELRIAGGAVRDLLSGKRPEDVDFATTATPEEMKSMFQT 92

  Fly   127 EEVRMINANGEKHGTITPRINDKENFEVTTLRIDIRTDGRHAEVMYTTDWQLDANRRDLTINSMF 191
            ..|||||..||||||||.|::: |||||||||:|::||||||||.:|||||.||.||||||||||
Zfish    93 AGVRMINNKGEKHGTITARLHE-ENFEVTTLRVDVQTDGRHAEVEFTTDWQKDAERRDLTINSMF 156

  Fly   192 LGFDGTVYDYFYGYDDLQERRVVFVGEADIRIKEDFLRILRYFRFYGRIASEENNHDKATLAAIK 256
            ||.|||:||||.||:||:.|:|.|||.|.:||:||:||||||||||||:|:|...|:..||.||:
Zfish   157 LGLDGTLYDYFQGYEDLKNRKVRFVGSASLRIQEDYLRILRYFRFYGRVAAEPGQHEPETLEAIR 221

  Fly   257 ENAKGLARISGERIWSELQKIVPGNFGAALFLEMHRCNLFEYIGLPKEPYLDEFDRLCKALDQFE 321
            |||:|||.|||||||.||:|::.||....|...::...|.:|.|||.:..::|..::      ::
Zfish   222 ENARGLAGISGERIWVELKKMLVGNHAGHLLELVYELGLAQYTGLPADGDVEEMKQV------WQ 280

  Fly   322 KPH----QPILYLAGMLHSVEDAMEMHKRLKLSAYERDLARFITQERE---KVGSQYTTLRDYQK 379
            :.|    :|:..||.:.....|...:.:|||:|..|::|..|:.:.|.   |...::.|::.|  
Zfish   281 RAHVSSPKPMTVLAALFRKQADVENLDQRLKVSREEKNLGLFLVKYRRDLVKGHDEHDTMKPY-- 343

  Fly   380 LCLQKYIQRDFVE------------QLLKYSGKLELYNQLKSWVKPDFPIRGNALAQRG-LNGMR 431
                    .||:.            :||||.|:.:|.::|:.|..|.||:.|:.|.:.| .:|..
Zfish   344 --------TDFITDSREPDTQSKVLELLKYQGENKLLDELRRWSIPRFPVSGHDLRKLGYTSGKE 400

  Fly   432 LGLVMDELKLLWADSDFQLTHDDLL 456
            :|.::.||:.:|..|.:|::.|:||
Zfish   401 IGTILQELRDMWKKSRYQMSKDELL 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2100NP_001163512.1 PcnB 71..465 CDD:223690 190/406 (47%)
NT_ClassII-CCAase 73..210 CDD:143388 93/136 (68%)
PolyA_pol_RNAbd 248..302 CDD:289399 26/53 (49%)
trnt1XP_005166087.1 PcnB 37..414 CDD:223690 185/393 (47%)
NT_ClassII-CCAase 45..175 CDD:143388 91/130 (70%)
PolyA_pol_RNAbd 213..263 CDD:289399 24/49 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170580793
Domainoid 1 1.000 188 1.000 Domainoid score I3253
eggNOG 1 0.900 - - E1_COG0617
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9333
Inparanoid 1 1.050 368 1.000 Inparanoid score I2107
OMA 1 1.010 - - QHG48492
OrthoDB 1 1.010 - - D512946at33208
OrthoFinder 1 1.000 - - FOG0001890
OrthoInspector 1 1.000 - - oto40463
orthoMCL 1 0.900 - - OOG6_103014
Panther 1 1.100 - - LDO PTHR46173
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1426
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.770

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