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Protein Alignment CG1239 and Bcdin3d

DIOPT Version :9

Sequence 1:	NP_001287185.1	Gene:	CG1239 / 40706	FlyBaseID:	FBgn0037368	Length:	300	Species:	Drosophila melanogaster
Sequence 2:	NP_001102221.1	Gene:	Bcdin3d / 363001	RGDID:	1306433	Length:	285	Species:	Rattus norvegicus

Alignment Length:	230	Identity:	64/230 - (27%)
Similarity:	93/230 - (40%)	Gaps:	75/230 - (32%)

- Green bases have known domain annotations that are detailed below.

  Fly    77 YGNYKHYYGKRILNKDFH--DIRLDVLGTQPDLFRNKQL-------------LDIGCNSGHLSIQ 126
            :||:.||       ..||  :.||.:|  .|:|.|  ||             ||:|||||.||:.
  Rat    31 FGNFPHY-------SRFHPPEQRLRLL--PPELLR--QLFPPEGPERRPILGLDVGCNSGDLSMA 84

  Fly   127 IARKF------EVKS-------LVGLDIDRGLINDAQK--------TVSHLKRHATPGQGIPHIQ 170
            :.:.|      |..|       |:..|||..|:..|:.        |...|.......:.:|...
  Rat    85 LYKHFLSPHDGETSSGTSRELRLLCCDIDPVLVERAENGCRFPDALTFITLDIMDQESRKVPLSS 149

  Fly   171 FVHGNYVLEDDVLLEIERPQFDVILCLSVTKWIHLNFCDSGLKQAFRRM-----YLQLRPGGKLI 230
            |           |.:..|..||::.|:|||.|||||..|.||.:....:     |        |:
  Rat   150 F-----------LSQFGRSVFDIVFCMSVTMWIHLNHGDRGLCEFLAHVSSLCSY--------LL 195

  Fly   231 LEPQSFDGY----KRRKKLSEQIRDNYNAIKFRPD 261
            :|||.:..|    :|.:||.....|::.::..|.|
  Rat   196 VEPQPWKCYRAAARRLRKLGLHNFDHFRSLAIRGD 230

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.