DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab23 and Rab24

DIOPT Version :9

Sequence 1:NP_649574.1 Gene:Rab23 / 40701 FlyBaseID:FBgn0037364 Length:268 Species:Drosophila melanogaster
Sequence 2:NP_001015023.2 Gene:Rab24 / 361208 RGDID:1309112 Length:203 Species:Rattus norvegicus


Alignment Length:179 Identity:55/179 - (30%)
Similarity:96/179 - (53%) Gaps:16/179 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 IKVVIVGNGGVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIEIDGEDVRIMLWDTAGQEEFDC 101
            :|||::|...|||:|:::||....| ...|:.|||..|:.:.:.:....|.:.:|||||.|.::.
  Rat     8 VKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMCVGDRTVTLGIWDTAGSERYEA 72

  Fly   102 ITKAYYRGAQASVLVFSTTDRASFDAIKDW---KRKVENECNEIPTVIVQNKIDLIEQ----AVV 159
            :::.|||||:|:::.:..||.:||:..|.|   .|.:|..|.   ..:...|.||:|:    ..|
  Rat    73 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRSLEEGCQ---IYLCGTKSDLLEEDRRRRRV 134

  Fly   160 TADEVETLAKLLNCRLIRTSVKEDINVASVFR-----YLATKCHQLMTQ 203
            ...:|:..|..:..:|..||.|...:|..:|:     |::....|:||:
  Rat   135 DFHDVQDYADNIKAQLFETSSKTGQSVDELFQKVAEDYVSVAAFQVMTE 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab23NP_649574.1 Ras 50..199 CDD:278499 46/161 (29%)
Rab23_like 50..197 CDD:133306 46/159 (29%)
Rab24NP_001015023.2 Rab24 8..201 CDD:133318 55/179 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1340129at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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