DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab23 and Rab2

DIOPT Version :9

Sequence 1:NP_649574.1 Gene:Rab23 / 40701 FlyBaseID:FBgn0037364 Length:268 Species:Drosophila melanogaster
Sequence 2:NP_001260732.1 Gene:Rab2 / 35577 FlyBaseID:FBgn0014009 Length:213 Species:Drosophila melanogaster


Alignment Length:207 Identity:62/207 - (29%)
Similarity:105/207 - (50%) Gaps:9/207 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 KVVIVGNGGVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIEIDGEDVRIMLWDTAGQEEFDCIT 103
            |.:|:|:.|||||.::.::....|...:..||||:|..|.|.|||:.:::.:|||||||.|..||
  Fly     8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQEAFRSIT 72

  Fly   104 KAYYRGAQASVLVFSTTDRASFDAIKDWKRKVENECN-EIPTVIVQNKIDLIEQAVVTADEVETL 167
            ::|||||..::||:..|.|.:|:.:..|........| .:..:::.||.||..:..|..:|.|..
  Fly    73 RSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDSRREVKKEEGEAF 137

  Fly   168 AKLLNCRLIRTSVKEDINVASVFRYLATKCHQLMTQSYDQVAGNQQN-----SSHPPYSSTPTIS 227
            |:......:.||.:...||...|...|.:.::.:.:....: .|:.|     ..|.|  :.|::.
  Fly   138 AREHGLVFMETSARTAANVEEAFINTAKEIYEKIQEGVFDI-NNEANGIKIGQQHSP--TNPSLP 199

  Fly   228 AFSPTFTKSSSG 239
            ........::||
  Fly   200 GAGGAAGAANSG 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab23NP_649574.1 Ras 50..199 CDD:278499 49/149 (33%)
Rab23_like 50..197 CDD:133306 49/147 (33%)
Rab2NP_001260732.1 PLN03108 1..213 CDD:178655 62/207 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454203
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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