DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab23 and Rab9Fb

DIOPT Version :9

Sequence 1:NP_649574.1 Gene:Rab23 / 40701 FlyBaseID:FBgn0037364 Length:268 Species:Drosophila melanogaster
Sequence 2:NP_727472.1 Gene:Rab9Fb / 32029 FlyBaseID:FBgn0052670 Length:214 Species:Drosophila melanogaster


Alignment Length:202 Identity:59/202 - (29%)
Similarity:105/202 - (51%) Gaps:14/202 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 AQYNYTSMREDDIELAIKVVIVGNGGVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIEIDGEDV 86
            :||:|          ..|::::|:.|||||.::.|:....||:.:..|:|:||..|.:|:.|..|
  Fly     2 SQYDY----------LFKILVLGDIGVGKSCLLMRFSDNRFTEKHVCTVGMDFRVRNVELAGRMV 56

  Fly    87 RIMLWDTAGQEEFDCITKAYYRGAQASVLVFSTTDRASFDAIKDWKRKVENECNE-IPTVIVQNK 150
            .:.:|||||.|.|..:..:|||||...:||:..|...||..|..|.:::....:| :..::|.||
  Fly    57 MLQIWDTAGDERFKSLLPSYYRGAHGILLVYDITSSKSFRNIDGWLKEIRRMSSESVNVMLVGNK 121

  Fly   151 IDLIEQAVVTADEVETLAKLLNCRLIRTSVKEDINVASVFRYLATKCH-QLMTQSYDQVAGNQ-- 212
            .|.::...|..::....|..........|.|...||..||..|:...: :|:..:.::::|.|  
  Fly   122 CDDLDNRQVRMEQGFNYANHRALGFYEVSAKSGANVNDVFNMLSVGIYNRLVIHTPNRLSGGQET 186

  Fly   213 QNSSHPP 219
            ::::.||
  Fly   187 EDTAEPP 193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab23NP_649574.1 Ras 50..199 CDD:278499 46/150 (31%)
Rab23_like 50..197 CDD:133306 46/147 (31%)
Rab9FbNP_727472.1 RAB 8..171 CDD:197555 51/162 (31%)
Rab 8..165 CDD:206640 50/156 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454280
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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